PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0711s0090.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 476aa    MW: 53277.9 Da    PI: 8.5179
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0711s0090.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.3e-20107197199
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             f+k l++s+v +  ++ lp +f+++h  ++   + t+tl de g+++++k+i  k++    l++GW++F+ a++L egD++vF+l+g
  SapurV1A.0711s0090.4.p 107 FVKSLVRSHVASCFWMGLPGSFCRAHlPHV---DATVTLLDECGKEFKMKYIAYKTG----LSAGWRQFCVAHQLFEGDVLVFQLIG 186
                             89************************5333...569***************666665....9************************* PP

                             SSEE..EEEEE-S CS
                      B3  87 rsefelvvkvfrk 99 
                             + +f  +v v+r+
  SapurV1A.0711s0090.4.p 187 SCTF--KVYVIRA 197
                             8888..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-21100198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-25101198IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-26105196No hitNo description
SMARTSM010193.0E-23107198IPR003340B3 DNA binding domain
PfamPF023621.1E-17107197IPR003340B3 DNA binding domain
PROSITE profilePS5086312.985107198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSGRVKKEAE ETDLIKPQPF HEENRKYVED GDGKQKSPME TTAKRLKIKR RYSDSKLKFV  60
ISGHAGKCAW QNKAPVERSN TVGEVKSSAL IRAEEVQSNL EPAFPSFVKS LVRSHVASCF  120
WMGLPGSFCR AHLPHVDATV TLLDECGKEF KMKYIAYKTG LSAGWRQFCV AHQLFEGDVL  180
VFQLIGSCTF KVYVIRANDL TEVDGALGLL NLDAQIKQNI ADNAGRDTAA CKSSKRKRPR  240
SLPLAIVQKK NKKSGQPRSS VLQAGQPAEQ SENDSEEVGS EVLEGFKLSL PAVQFKDIKS  300
FEDFNILVDG LLLDSELSED IRNKYYKLCC SQNAFLHDNL IKGVNLKLIA GIISETVNIA  360
DAMRACTLTT SRDEFGTWDK ALKASELFGM NVGFLRTKLG LLLSLAFDSE GAAKTRRYIE  420
ARLKRVQTED EIRNLEAKLV ELKETYERYG ADVERLKSKA EDYEVRFQEQ VLAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0711s0090.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380709.10.0B3 domain-containing protein Os01g0234100 isoform X2
RefseqXP_011010191.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLU5G8B00.0U5G8B0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11170.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-38B3 family protein