PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0711s0090.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 489aa    MW: 54561.5 Da    PI: 8.5179
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0711s0090.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.37.7e-20120210199
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             f+k l++s+v +  ++ lp +f+++h  ++   + t+tl de g+++++k+i  k++    l++GW++F+ a++L egD++vF+l+g
  SapurV1A.0711s0090.2.p 120 FVKSLVRSHVASCFWMGLPGSFCRAHlPHV---DATVTLLDECGKEFKMKYIAYKTG----LSAGWRQFCVAHQLFEGDVLVFQLIG 199
                             89************************5333...569***************666665....9************************* PP

                             SSEE..EEEEE-S CS
                      B3  87 rsefelvvkvfrk 99 
                             + +f  +v v+r+
  SapurV1A.0711s0090.2.p 200 SCTF--KVYVIRA 210
                             8888..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-21113211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-25114211IPR015300DNA-binding pseudobarrel domain
CDDcd100172.67E-26118209No hitNo description
PfamPF023621.2E-17120210IPR003340B3 DNA binding domain
SMARTSM010193.0E-23120211IPR003340B3 DNA binding domain
PROSITE profilePS5086312.985120211IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSGRVKKEAE ETDLIKPQPF HEENRKYVED GDVILAQLAL SLSSSGKQKS PMETTAKRLK  60
IKRRYSDSKL KFVISGHAGK CAWQNKAPVE RSNTVGEVKS SALIRAEEVQ SNLEPAFPSF  120
VKSLVRSHVA SCFWMGLPGS FCRAHLPHVD ATVTLLDECG KEFKMKYIAY KTGLSAGWRQ  180
FCVAHQLFEG DVLVFQLIGS CTFKVYVIRA NDLTEVDGAL GLLNLDAQIK QNIADNAGRD  240
TAACKSSKRK RPRSLPLAIV QKKNKKSGQP RSSVLQAGQP AEQSENDSEE VGSEVLEGFK  300
LSLPAVQFKD IKSFEDFNIL VDGLLLDSEL SEDIRNKYYK LCCSQNAFLH DNLIKGVNLK  360
LIAGIISETV NIADAMRACT LTTSRDEFGT WDKALKASEL FGMNVGFLRT KLGLLLSLAF  420
DSEGAAKTRR YIEARLKRVQ TEDEIRNLEA KLVELKETYE RYGADVERLK SKAEDYEVRF  480
QEQVLAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0711s0090.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380709.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLU5G8B00.0U5G8B0_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11170.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-38B3 family protein