PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0711s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 491aa    MW: 54737.7 Da    PI: 8.5155
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0711s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.37.7e-20122212199
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             f+k l++s+v +  ++ lp +f+++h  ++   + t+tl de g+++++k+i  k++    l++GW++F+ a++L egD++vF+l+g
  SapurV1A.0711s0090.1.p 122 FVKSLVRSHVASCFWMGLPGSFCRAHlPHV---DATVTLLDECGKEFKMKYIAYKTG----LSAGWRQFCVAHQLFEGDVLVFQLIG 201
                             89************************5333...569***************666665....9************************* PP

                             SSEE..EEEEE-S CS
                      B3  87 rsefelvvkvfrk 99 
                             + +f  +v v+r+
  SapurV1A.0711s0090.1.p 202 SCTF--KVYVIRA 212
                             8888..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-21115213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-25116213IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-26120211No hitNo description
PROSITE profilePS5086312.985122213IPR003340B3 DNA binding domain
PfamPF023621.2E-17122212IPR003340B3 DNA binding domain
SMARTSM010193.0E-23122213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MSGRVKKEAE ETDLIKPQPF HEENRKYVED GDVILAQLAL SLSSSGKQKS PMETTAKRLK  60
IKRRYSDSKL KFVISGHAGK CACCRQNKAP VERSNTVGEV KSSALIRAEE VQSNLEPAFP  120
SFVKSLVRSH VASCFWMGLP GSFCRAHLPH VDATVTLLDE CGKEFKMKYI AYKTGLSAGW  180
RQFCVAHQLF EGDVLVFQLI GSCTFKVYVI RANDLTEVDG ALGLLNLDAQ IKQNIADNAG  240
RDTAACKSSK RKRPRSLPLA IVQKKNKKSG QPRSSVLQAG QPAEQSENDS EEVGSEVLEG  300
FKLSLPAVQF KDIKSFEDFN ILVDGLLLDS ELSEDIRNKY YKLCCSQNAF LHDNLIKGVN  360
LKLIAGIISE TVNIADAMRA CTLTTSRDEF GTWDKALKAS ELFGMNVGFL RTKLGLLLSL  420
AFDSEGAAKT RRYIEARLKR VQTEDEIRNL EAKLVELKET YERYGADVER LKSKAEDYEV  480
RFQEQVLAPW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0711s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010190.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLB9HHH50.0B9HHH5_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11170.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-38B3 family protein