PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0672s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 345aa    MW: 38710.8 Da    PI: 7.535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0672s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09171218455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  SapurV1A.0672s0080.1.p 171 SHSLAERVRREKISERMKMLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 218
                             8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.58E-10165222No hitNo description
SuperFamilySSF474597.85E-17165232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-17167230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.675167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6171218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAAFSYQHTP LFLDPVILPS ITEPLKNMNN SMYWFYDEAG SFNNSCFSQV YPPETFHETP  60
LDVRFHEISD NETSLTKKQS TDSSTVVDKL ESGEQVTQKV TPVDRKRKTT NGSLNSAQSK  120
GVKEVKSKRQ RKCRGDMKEE EKKPKAEKKV PEEPSTGYVH VRARRGQATD SHSLAERVRR  180
EKISERMKML QRLVPGCDKV TGKALMLDEI INYVQSLQNQ VEFLSMKLAS ANPLFYDFGM  240
ELDAFMVKPE SLSSMSPPLP SLQQRSPIQP PAFADAAAAT TATPSFATAN NYPLIDNSTS  300
LLLQGMRLTA FATEDSCNLM WDVDEQKQKF HSPTGFTNNL CSFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130KSKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0672s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3918264e-61FQ391826.1 Vitis vinifera clone SS0AFA9YF22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438030.10.0transcription factor bHLH137
TrEMBLB9I3Y00.0B9I3Y0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s10670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.26e-54bHLH family protein