PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0650s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 278aa    MW: 31764.2 Da    PI: 8.1891
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0650s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.24.2e-1320103186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                             +W++  + +L+ea  ++  +l++g+l++++W+ev++++  r+ g+  +++ +qCk++++ l+k+yk +k           st+p++ 
  SapurV1A.0650s0110.1.p  20 CWSDGATETLVEAWGDRYINLNKGNLRQKDWKEVADAVnsRQNGInpKKTDIQCKNRIDTLKKKYKIEKSKPPP------STWPFYY 100
                             7*************************************88666766678999**************99887775......5899999 PP

                trihelix  84 qle 86 
                             +l+
  SapurV1A.0650s0110.1.p 101 RLD 103
                             987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2618105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDPSPSAAIT RPHHGGREDC WSDGATETLV EAWGDRYINL NKGNLRQKDW KEVADAVNSR  60
QNGINPKKTD IQCKNRIDTL KKKYKIEKSK PPPSTWPFYY RLDSLIGTNS NATDTFKKPT  120
SVTLTVKSKT KPQKDVYPGL ACCGGSSSDD DEDDMAWFDE RVKKKRHRME DVDLSDGAAC  180
RELARAILKF GEIYERIESS KQQQMMELEK QRMEFTKEVE FERMNLFVDA QLELKKKSFC  240
RDKLASSSGL FNEILNVVYL FFNWGSLILT FLILGCC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0650s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2312275e-91CU231227.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463630.11e-164trihelix transcription factor ASIL2 isoform X1
RefseqXP_024463633.11e-164trihelix transcription factor ASIL2 isoform X4
SwissprotQ9LJG81e-29ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A3N7FI370.0A0A3N7FI37_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07140.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.19e-68sequence-specific DNA binding transcription factors