PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0635s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 781aa    MW: 85664.2 Da    PI: 6.5527
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0635s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.11e-14490529241
                     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                             ++k+CnCk+skClk+YCeCfaag +C e C+C +C+N+  
  SapurV1A.0635s0050.1.p 490 SCKRCNCKRSKCLKLYCECFAAGLYCIEPCSCLECSNNPA 529
                             689**********************************975 PP
2TCR482.5e-15575613139
                     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                             ++k+gCnCkks+ClkkYCeCf+ g+ Cs+ C+Ce+CkN+
  SapurV1A.0635s0050.1.p 575 RHKRGCNCKKSSCLKKYCECFQGGVGCSSYCRCEGCKNT 613
                             589***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.6E-16489530IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.626490615IPR005172CRC domain
PfamPF036385.5E-11492527IPR005172CRC domain
SMARTSM011141.2E-14575616IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.9E-12577613IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MELNTPNKNQ IPATNPLSQF EDSPVFNYIN NLSPIELVKS MHNGQAFNLP SFASPLSVFA  60
SPQLSSQSDA RSFIRRYQFP EPSKPEFFQS KDENDTSKGV LEAAQLTGLS VEQSECSTPA  120
NSSKGVITKL PGEHMESAIE EPIALKYYCA SPDDNIIMVP LKAIIEPEMV GDPNERYCSR  180
ESERYCSRES EKDLRKICRT GQNEDEAGCD WVALISDVAD ILTLEPSIDE ESDEKQKLVD  240
SGTISFISNV LQAPQDNSND SKTPNYAGSS QQREIGEPGI QPVESGEQNE ADQTPSVFPG  300
TLPDKAAVND AAAKVDIRGK SYQSSSKQQN KIRRRCLVFE MGAHKKKLTF ESSSSTLSQS  360
DRMGASIEKH ATPRTDKGKT LSALPGRGIG LHLNALTASS SGKAVKIETL ASGKQEISQP  420
PSPAAHMTSG SDPVSKSLAL TTVETDFVPF DNKDKVMENA AKTLMVVTED IGISSPKMKR  480
QKMEFLGASS CKRCNCKRSK CLKLYCECFA AGLYCIEPCS CLECSNNPAH EETVLETRKQ  540
IESRNPLAFA PKVIRNSDSV SEFGEETNKT PASARHKRGC NCKKSSCLKK YCECFQGGVG  600
CSSYCRCEGC KNTFGCKNGV EENDIKWEEP KTHENTSNLN LLDIIEKGED HPDLIAPSKD  660
SRSPVHPQIP FSGQLPGSSL CDVGPSTQIM CRPIQRFRTN FFYHQPKYEK HLQVIPEDET  720
PEILNSNCLP TSGVKSVSPN SKRVSPPHHG FGPSTTWRRG RKLILRSVSP STSLNPPSEQ  780
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1749461214120Protein lin-54 homolog
5fd3_B1e-1749461214120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0635s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024456351.10.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A2K2ABV50.0A0A2K2ABV5_POPTR; Uncharacterized protein
STRINGPOPTR_0005s05270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.19e-79Tesmin/TSO1-like CXC domain-containing protein