PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0627s0060.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 455aa    MW: 51544.2 Da    PI: 5.5428
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0627s0060.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.1e-18109197197
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f k+l++s+v+   ++ lp +f++ h  +k +++t+ le+esg+++ +++i ++    + l++GWk F+ an+L egD++vF+l++ 
  SapurV1A.0627s0060.4.p 109 FAKTLVRSNVTVGFWMHLPMRFCKMHL-PK-NDTTVFLENESGEEYILNYIAER----TALSGGWKAFCAANNLLEGDVLVFHLVKP 189
                             89*********************9994.33.5679***************4444....55************************998 PP

                             SEE..EEEEE CS
                      B3  88 sefelvvkvf 97 
                             s+f  +v ++
  SapurV1A.0627s0060.4.p 190 SRF--KVYIV 197
                             888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-22103200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-24105199IPR015300DNA-binding pseudobarrel domain
CDDcd100176.88E-26107198No hitNo description
PROSITE profilePS5086313.916109200IPR003340B3 DNA binding domain
SMARTSM010191.5E-20109200IPR003340B3 DNA binding domain
PfamPF023627.7E-17109197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEDQNTSPEP RLPISNPVPL NTYPRIRRRK PNMSKLKLTQ IHEKSPEPEY KAGHEIVLYD  60
KSGESRDPRS RKRKKDAFSV FYDSTETKSP AMELAEVIRA NLEAAYPSFA KTLVRSNVTV  120
GFWMHLPMRF CKMHLPKNDT TVFLENESGE EYILNYIAER TALSGGWKAF CAANNLLEGD  180
VLVFHLVKPS RFKVYIVKGN GSSQTDAEKD VEGGKKAKHL ELLPAGHMED NNQENGLIVA  240
DNNEGYAVNQ SENESEDRAS ETLGVIKLSG STVDFDNVEG IDNFSILLNG FAIDSELSEH  300
HRIKYYELCR SQNSFLHSNL LNSINHKLAA EIIIGTVDIS EGIRSSKLSS SHADYGVWDK  360
TLKGFELFGM KVGFLRERLN RLMSLALESE EAMESECREV KLEQARVDSE MKNLELRLLK  420
LKDTRERLDD EIEALKENAE KHELMFQEAV NAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17074RKRKK
27075RKRKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0627s0060.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2295033e-50CU229503.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384419.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLB9N4X40.0B9N4X4_POPTR; B3 family protein
STRINGPOPTR_0004s14900.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-32B3 family protein