PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0627s0060.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 456aa MW: 51672.3 Da PI: 5.5428 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.6 | 1.1e-18 | 110 | 198 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+l++s+v+ ++ lp +f++ h +k +++t+ le+esg+++ +++i ++ + l++GWk F+ an+L egD++vF+l++ SapurV1A.0627s0060.3.p 110 FAKTLVRSNVTVGFWMHLPMRFCKMHL-PK-NDTTVFLENESGEEYILNYIAER----TALSGGWKAFCAANNLLEGDVLVFHLVKP 190 89*********************9994.33.5679***************4444....55************************998 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 s+f +v ++ SapurV1A.0627s0060.3.p 191 SRF--KVYIV 198 888..66665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.7E-22 | 104 | 201 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-24 | 106 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.29E-26 | 108 | 199 | No hit | No description |
Pfam | PF02362 | 7.7E-17 | 110 | 198 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.916 | 110 | 201 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-20 | 110 | 201 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 456 aa Download sequence Send to blast |
MEDQNTSPEP RLPISNPVPL NTYPRIRRRK PNMSKLKLTQ IHEKSPEPEY KAGHEIQVLY 60 DKSGESRDPR SRKRKKDAFS VFYDSTETKS PAMELAEVIR ANLEAAYPSF AKTLVRSNVT 120 VGFWMHLPMR FCKMHLPKND TTVFLENESG EEYILNYIAE RTALSGGWKA FCAANNLLEG 180 DVLVFHLVKP SRFKVYIVKG NGSSQTDAEK DVEGGKKAKH LELLPAGHME DNNQENGLIV 240 ADNNEGYAVN QSENESEDRA SETLGVIKLS GSTVDFDNVE GIDNFSILLN GFAIDSELSE 300 HHRIKYYELC RSQNSFLHSN LLNSINHKLA AEIIIGTVDI SEGIRSSKLS SSHADYGVWD 360 KTLKGFELFG MKVGFLRERL NRLMSLALES EEAMESECRE VKLEQARVDS EMKNLELRLL 420 KLKDTRERLD DEIEALKENA EKHELMFQEA VNAPW* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 71 | 75 | RKRKK |
2 | 71 | 76 | RKRKKD |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0627s0060.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU229503 | 3e-50 | CU229503.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454434.1 | 0.0 | B3 domain-containing protein Os01g0234100 isoform X1 | ||||
TrEMBL | A0A3N7G665 | 0.0 | A0A3N7G665_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s14900.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-32 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0627s0060.3.p |