PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0627s0060.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 457aa MW: 51770.4 Da PI: 5.4269 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.6 | 1.1e-18 | 109 | 197 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+l++s+v+ ++ lp +f++ h +k +++t+ le+esg+++ +++i ++ + l++GWk F+ an+L egD++vF+l++ SapurV1A.0627s0060.2.p 109 FAKTLVRSNVTVGFWMHLPMRFCKMHL-PK-NDTTVFLENESGEEYILNYIAER----TALSGGWKAFCAANNLLEGDVLVFHLVKP 189 89*********************9994.33.5679***************4444....55************************998 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 s+f +v ++ SapurV1A.0627s0060.2.p 190 SRF--KVYIV 197 888..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.7E-22 | 103 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-24 | 105 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.18E-26 | 107 | 198 | No hit | No description |
PROSITE profile | PS50863 | 13.916 | 109 | 200 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-20 | 109 | 200 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.7E-17 | 109 | 197 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MEDQNTSPEP RLPISNPVPL NTYPRIRRRK PNMSKLKLTQ IHEKSPEPEY KAGHEIVLYD 60 KSGESRDPRS RKRKKDAFSV FYDSTETKSP AMELAEVIRA NLEAAYPSFA KTLVRSNVTV 120 GFWMHLPMRF CKMHLPKNDT TVFLENESGE EYILNYIAER TALSGGWKAF CAANNLLEGD 180 VLVFHLVKPS RFKVYIVKGN GSSQTDEPAE KDVEGGKKAK HLELLPAGHM EDNNQENGLI 240 VADNNEGYAV NQSENESEDR ASETLGVIKL SGSTVDFDNV EGIDNFSILL NGFAIDSELS 300 EHHRIKYYEL CRSQNSFLHS NLLNSINHKL AAEIIIGTVD ISEGIRSSKL SSSHADYGVW 360 DKTLKGFELF GMKVGFLRER LNRLMSLALE SEEAMESECR EVKLEQARVD SEMKNLELRL 420 LKLKDTRERL DDEIEALKEN AEKHELMFQE AVNAPW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 74 | RKRKK |
2 | 70 | 75 | RKRKKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0627s0060.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU229503 | 3e-50 | CU229503.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006384419.1 | 0.0 | B3 domain-containing protein Os01g0234100 isoform X2 | ||||
TrEMBL | B9N4X4 | 0.0 | B9N4X4_POPTR; B3 family protein | ||||
STRING | POPTR_0004s14900.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-32 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0627s0060.2.p |