PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0627s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 458aa    MW: 51898.6 Da    PI: 5.4269
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0627s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.2e-18110198197
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f k+l++s+v+   ++ lp +f++ h  +k +++t+ le+esg+++ +++i ++    + l++GWk F+ an+L egD++vF+l++ 
  SapurV1A.0627s0060.1.p 110 FAKTLVRSNVTVGFWMHLPMRFCKMHL-PK-NDTTVFLENESGEEYILNYIAER----TALSGGWKAFCAANNLLEGDVLVFHLVKP 190
                             89*********************9994.33.5679***************4444....55************************998 PP

                             SEE..EEEEE CS
                      B3  88 sefelvvkvf 97 
                             s+f  +v ++
  SapurV1A.0627s0060.1.p 191 SRF--KVYIV 198
                             888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-22104201IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-24106200IPR015300DNA-binding pseudobarrel domain
CDDcd100175.59E-26108199No hitNo description
PROSITE profilePS5086313.916110201IPR003340B3 DNA binding domain
SMARTSM010191.5E-20110201IPR003340B3 DNA binding domain
PfamPF023627.8E-17110198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEDQNTSPEP RLPISNPVPL NTYPRIRRRK PNMSKLKLTQ IHEKSPEPEY KAGHEIQVLY  60
DKSGESRDPR SRKRKKDAFS VFYDSTETKS PAMELAEVIR ANLEAAYPSF AKTLVRSNVT  120
VGFWMHLPMR FCKMHLPKND TTVFLENESG EEYILNYIAE RTALSGGWKA FCAANNLLEG  180
DVLVFHLVKP SRFKVYIVKG NGSSQTDEPA EKDVEGGKKA KHLELLPAGH MEDNNQENGL  240
IVADNNEGYA VNQSENESED RASETLGVIK LSGSTVDFDN VEGIDNFSIL LNGFAIDSEL  300
SEHHRIKYYE LCRSQNSFLH SNLLNSINHK LAAEIIIGTV DISEGIRSSK LSSSHADYGV  360
WDKTLKGFEL FGMKVGFLRE RLNRLMSLAL ESEEAMESEC REVKLEQARV DSEMKNLELR  420
LLKLKDTRER LDDEIEALKE NAEKHELMFQ EAVNAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17175RKRKK
27176RKRKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0627s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2295033e-50CU229503.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454434.10.0B3 domain-containing protein Os01g0234100 isoform X1
TrEMBLA0A3N7G6650.0A0A3N7G665_POPTR; Uncharacterized protein
STRINGPOPTR_0004s14900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-32B3 family protein