PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0616s0110.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 386aa MW: 43020.7 Da PI: 8.4731 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.6 | 6.2e-25 | 79 | 122 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e SapurV1A.0616s0110.3.p 79 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 122 79***************************************997 PP | |||||||
2 | QLQ | 59.7 | 8.2e-21 | 10 | 44 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy++++ P+Pp+Ll+ i+ SapurV1A.0616s0110.3.p 10 PFTASQWQELEHQALIYKYMVSGIPIPPDLLFTIK 44 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.1E-12 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.1E-15 | 10 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.741 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.888 | 79 | 123 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.1E-20 | 80 | 122 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MIMSGGNRFP FTASQWQELE HQALIYKYMV SGIPIPPDLL FTIKRSGCLD SSLSSKLFPR 60 QPPHFSWSCF QMGLGRKIDP EPGRCRRTDG KKWRCSKEAY PDSKYCEKHM HRGKNRSRKP 120 VEVATQSTTA PNVSSITRNH SNNSLLTTSS HSLSLLLPET HHQNHLHYPA PSGYHAHPNH 180 QFLSSSRPLG IGLSPHENST HLLLDSGGPS LSNTDYRNRN VYGLKEEVDE HAFFSESSGS 240 MRSLSGSSLD DASQLSPLTM NSSPSNTNSS KQRSLSGLHN EYSYLQLQSL SDHDTPKQQK 300 QYQHSYLLGS SNIGSLGPIE MEKEKSQKTV HRFFDEWPPE NKDSWLDLAD KSSNSASVST 360 TGLSMSIPSS HDFLPIFSSR TNNDG* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00263 | DAP | Transfer from AT2G06200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0616s0110.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182662 | 1e-132 | AC182662.2 Populus trichocarpa clone Pop1-15O24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011045984.1 | 0.0 | PREDICTED: growth-regulating factor 1 isoform X3 | ||||
TrEMBL | A0A2K2A2B4 | 0.0 | A0A2K2A2B4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s14560.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-57 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0616s0110.3.p |