PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0610s0050.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 80aa MW: 8981.82 Da PI: 7.5364 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.4 | 2.2e-10 | 30 | 69 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++E l+++ +++ G++ W++Ia +++ gRt++++ ++w SapurV1A.0610s0050.3.p 30 DFSEDEVSLIARMFRLVGKR-WSLIAGRIP-GRTAEEIENYW 69 69******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.36E-10 | 16 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.364 | 23 | 77 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-8 | 27 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-12 | 30 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-9 | 30 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.13E-8 | 31 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MADSGHTSNY TDQDTKDAKS SANQDSNLQD FSEDEVSLIA RMFRLVGKRW SLIAGRIPGR 60 TAEEIENYWT AKNRSSKQR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0610s0050.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011037641.1 | 2e-38 | PREDICTED: MYB-like transcription factor ETC1 | ||||
Refseq | XP_024455215.1 | 2e-38 | MYB-like transcription factor ETC1 | ||||
Swissprot | Q9LNI5 | 5e-16 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | A0A2K2ANG3 | 5e-37 | A0A2K2ANG3_POPTR; MYB-like family protein | ||||
STRING | XP_002518480.1 | 5e-29 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 2e-18 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0610s0050.3.p |