PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0610s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 109aa MW: 12332.7 Da PI: 5.6949 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.4 | 4.5e-10 | 59 | 98 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++E l+++ +++ G++ W++Ia +++ gRt++++ ++w SapurV1A.0610s0050.1.p 59 DFSEDEVSLIARMFRLVGKR-WSLIAGRIP-GRTAEEIENYW 98 699*****************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.67E-9 | 49 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.364 | 52 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-8 | 56 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-12 | 59 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.7E-9 | 59 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.11E-9 | 60 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 109 aa Download sequence Send to blast |
MADSGHTSNY TDQDTKGHFS FPFLFLGSPI YYTMVLFSDM DCFVSDAKSS ANQDSNLQDF 60 SEDEVSLIAR MFRLVGKRWS LIAGRIPGRT AEEIENYWTA KNRSSKQR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0610s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011037641.1 | 3e-32 | PREDICTED: MYB-like transcription factor ETC1 | ||||
TrEMBL | A0A2K2ANG3 | 1e-30 | A0A2K2ANG3_POPTR; MYB-like family protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2692 | 31 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01380.1 | 7e-18 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0610s0050.1.p |