PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0608s0210.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 347aa    MW: 38655.2 Da    PI: 5.9806
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0608s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151463148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqkyl 48
                            +g+W++eEd +l+ +++q+G+g +W + ++++  ++R++k+c++rw++yl
  SapurV1A.0608s0210.1.p 14 KGPWSPEEDAILKTYIEQHGTGgNWIALPQKIVgLKRCGKSCRLRWLNYL 63
                            79**********************************************97 PP
2Myb_DNA-binding383.8e-1270112246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             g +++eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
  SapurV1A.0608s0210.1.p  70 GGFSEEEDDIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 112
                             569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.101963IPR017930Myb domain
SuperFamilySSF466892.45E-2611110IPR009057Homeodomain-like
SMARTSM007174.5E-121365IPR001005SANT/Myb domain
PfamPF002493.3E-141463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-231570IPR009057Homeodomain-like
CDDcd001671.69E-91663No hitNo description
PROSITE profilePS5129421.45364118IPR017930Myb domain
SMARTSM007179.9E-1168116IPR001005SANT/Myb domain
PfamPF002499.8E-1170112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2371118IPR009057Homeodomain-like
CDDcd001673.41E-872114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDAILKTYIE QHGTGGNWIA LPQKIVGLKR CGKSCRLRWL  60
NYLRPNIRHG GFSEEEDDII CSLYISIGSR WSIIAAQLPG RTDNDIKNYW NTRLKKKLLG  120
KQRREQADRR ASLKQQIMTK REINESFMVP GTIPHQESPY WPDVQAIVMN QNQDSHLMDQ  180
ESIRDLLAKL GGRFYDDNQG PNLSTKFNNY SLEGSSRQDH QVLYTNSVDM LSSSAPMRSM  240
DSTCCSQFPN SNYSGPNMSQ DGLESLLVEL GGLACSNPQH VEGLESFYGM DMAASGSTGA  300
SSAESNSWGN ISSLGYPQLV SDYETCLQSM PQDSSFEDSS FFGRPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141187108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0608s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031332.10.0PREDICTED: transcription factor RAX3 isoform X1
SwissprotQ9M2Y95e-86RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A3N7F5I90.0A0A3N7F5I9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.16e-80myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]