PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0571s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 192aa    MW: 21773.3 Da    PI: 6.6713
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0571s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-171562148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT eEd++l ++++ +G g W++ ar  g++Rt+k+c++rw++yl
  SapurV1A.0571s0200.1.p 15 KGPWTLEEDLILTNYIANHGEGVWNSLARAAGLKRTGKSCRLRWLNYL 62
                            79********************************************97 PP
2Myb_DNA-binding57.33.7e-1868111146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg+ T+eE++l+ +++++lG++ W++Ia++++ gRt++++k++w++
  SapurV1A.0571s0200.1.p  68 RGNITPEEQLLIMELHAKLGNR-WSKIAKHLP-GRTDNEIKNYWRT 111
                             7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.281062IPR017930Myb domain
SuperFamilySSF466891.46E-3012109IPR009057Homeodomain-like
SMARTSM007174.4E-131464IPR001005SANT/Myb domain
PfamPF002492.3E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-221669IPR009057Homeodomain-like
CDDcd001675.22E-101762No hitNo description
PROSITE profilePS5129426.44863117IPR017930Myb domain
SMARTSM007172.3E-1667115IPR001005SANT/Myb domain
PfamPF002498.5E-1768111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-2670115IPR009057Homeodomain-like
CDDcd001672.54E-1272111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDKSPCNSQE VEVRKGPWTL EEDLILTNYI ANHGEGVWNS LARAAGLKRT GKSCRLRWLN  60
YLRPDLRRGN ITPEEQLLIM ELHAKLGNRW SKIAKHLPGR TDNEIKNYWR TRIKKHSKQT  120
ETSAAESSET NEHGSSACQV SSTTDQMETF CPPFYQGDNV GAFSGGSIPQ ELNENYWSME  180
DLWSMQLLNG D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211524126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0571s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4970530.0FJ497053.1 Populus x canadensis MYBF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005145.11e-129PREDICTED: myb-related protein 305 isoform X2
SwissprotP813919e-90MYB05_ANTMA; Myb-related protein 305
TrEMBLE4W6781e-128E4W678_POPCA; MYBF1
STRINGevm.model.supercontig_186.71e-103(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.15e-80myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]