PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0561s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 915aa MW: 102215 Da PI: 6.2704 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.2 | 5.5e-18 | 62 | 134 | 2 | 88 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYA+++GFs+++++ ++ k++g + r+fvC +eg ++++ ++ C+a+l+++++++gkw+vt++++eHnH+ SapurV1A.0561s0070.1.p 62 FYDEYARHLGFSTKVAHFTRPKTDGATAAREFVCGREGLKRRSADS--------------CHAMLRIELKSQGKWVVTQFVKEHNHS 134 9**************************************9998877..............**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-14 | 62 | 135 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.8E-23 | 315 | 400 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 11.165 | 586 | 622 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.7E-10 | 592 | 620 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.8E-8 | 597 | 624 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 915 aa Download sequence Send to blast |
MDVHVIDDEE GTSHRGVAYN GDAERDDSGE ANNGEHDEDG AAELHEPCVG MEFDLENAAK 60 TFYDEYARHL GFSTKVAHFT RPKTDGATAA REFVCGREGL KRRSADSCHA MLRIELKSQG 120 KWVVTQFVKE HNHSTVNPSK VHYLRPRRHF AGAAKSAAKT GQGVGVFPSG DGQAAAVVTG 180 VVSQGVGVAS SVGCQGGGVV PSGVMYLSMD GNRTPVSETN HGVRNTTPAE PNRVVKTSTA 240 VNYIVRPSNQ KRTLGRDAQN LLEYFKKMQA ENPGFFYAIQ LDDENRMANV FWADARSRTA 300 YTHFGDAVTF ETNSRVNQYR VPFAPFTGLN HHGQTIIFGC AILLDDSEAS FVWLFKTFLT 360 AMYDQQPASL ITSQDKAIQT AVSQVFPDTR HCISKWHVLR EGQEKLANVC NAHPNFQLEL 420 YNCINLTETI EEFENSWIDI LDKYDLRGHD WLQSLYDARA QWVPVYFRDS FFAVMFPNQG 480 FDGTFFDGYV NQQTALPMFF RQYERALDNW FERELEADFD TICTTPVLRT PSPMEKQAAN 540 LYTRKIFAKF QEELVETFVY TANRIEGDAA ISTFRVAKFE DDQRAYMVSL NYPEMRANCS 600 CQMFEYSGIL CRHVLTVFTV TNVLTLPPHY ILKRWTRNAK TGAGTDDCGV DLPGEESLTL 660 RYNNLCREAI KYAEEGAIAV ETYNIAMSAL REGGKKVAVV KKNVAKVSPP GSQGSGTGHE 720 DWKTSTSVSD TTPFLWPPQD EVTRRFNLND TGPPLQSVAD LNLPRMAPVS LQRDDGPPGN 780 MAVLPCLKSM TWVMENKSST PGNRVAVINL KLQDYGKTPS TELEVKFQLS RVTLEPMLRS 840 MAYISEQLST PANRVAVINL KLQDTETTTG ESEVKFQVSR DTLGAMLRSM AYIREQLSIS 900 VEPQAEPPSK KHRK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0561s0070.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313618.3 | 0.0 | protein FAR1-RELATED SEQUENCE 3 | ||||
Refseq | XP_024464516.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A2K1Z8K8 | 0.0 | A0A2K1Z8K8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s16010.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0561s0070.1.p |
Publications ? help Back to Top | |||
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