PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0555s0090.6.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C3H

Protein Properties

Length: 271aa MW: 29121.4 Da PI: 7.9113

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0555s0090.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.4	2.4e-08	3	28	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaH++ SapurV1A.0555s0090.6.p 3 FKTKLCCKFRA-GTCPYITNCNFAHSM 28 69*******.***********95 PP
2	zf-CCCH	19.1	2.4e-06	75	100	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ SapurV1A.0555s0090.6.p 75 YKGRHCKKFYTEEGCPYGDNCTFLHD 100 78888********************7 PP
3	zf-CCCH	42.3	1.3e-13	153	178	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg SapurV1A.0555s0090.6.p 153 WKTRICNKWELTGYCPFGNKCHFAHG 178 8************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.98E-7	2	33	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-13	2	35	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.624	2	29	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0015	2	28	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-5	3	27	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-9	72	102	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.98E-8	73	102	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.23	74	102	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.058	74	101	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-17	148	182	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.4E-10	149	183	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.981	152	180	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.3E-9	152	179	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.1E-11	153	178	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MFFKTKLCCK FRAGTCPYIT NCNFAHSMEE LRRPPPNWQE IVAAHEEEKG NTVDAREEFQ 60 IPSIVGFGAE TQRSYKGRHC KKFYTEEGCP YGDNCTFLHD EQSKNRESVA ISLGPGGYGG 120 GGGGGGGGGG GGGGGGGGGN TGSNAVNVKP SNWKTRICNK WELTGYCPFG NKCHFAHGAG 180 ELHRYGGGLV DMDAKDSAFF PVESKQGGVP SKTPPETVVT SVTSVPNSDV YVQSQKSSIL 240 IQRPGQRTHQ KWKGPDKISR IYGDWIDDIE *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0555s0090.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018543.1	1e-171	PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X2
Swissprot	Q84UQ3	1e-114	C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBL	U5GRB7	1e-169	U5GRB7_POPTR; Uncharacterized protein
STRING	POPTR_0001s02330.1	1e-170	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-106	C3H family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0555s0090.6.p