PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0555s0090.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C3H | ||||||||
Protein Properties | Length: 361aa MW: 39019.8 Da PI: 7.1533 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.4e-08 | 91 | 116 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaH++ SapurV1A.0555s0090.2.p 91 FKTKLCCKFRA-GTCPYITNCNFAHSM 116 69*********.*************95 PP | |||||||
2 | zf-CCCH | 18.6 | 3.4e-06 | 163 | 188 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ SapurV1A.0555s0090.2.p 163 YKGRHCKKFYTEEGCPYGDNCTFLHD 188 78888********************7 PP | |||||||
3 | zf-CCCH | 41.8 | 1.8e-13 | 243 | 268 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg SapurV1A.0555s0090.2.p 243 WKTRICNKWELTGYCPFGNKCHFAHG 268 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 9.5E-14 | 88 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.16E-7 | 88 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.624 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0015 | 90 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-9 | 160 | 190 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-7 | 161 | 190 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 162 | 190 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.058 | 162 | 189 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-17 | 238 | 272 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-10 | 239 | 273 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.981 | 242 | 270 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-9 | 242 | 269 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-10 | 243 | 268 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MDYNRDFSGG NVISITGPDS WVSNSSDSNS VWATEDDYRF WNNSDVLNDN TLSNSNYQSS 60 ETRSGSEPPN KKSKNNSQEL NSKKSIGKMF FKTKLCCKFR AGTCPYITNC NFAHSMEELR 120 RPPPNWQEIV AAHEEEKGNT VDAREEFQIP SIVGFGAETQ RSYKGRHCKK FYTEEGCPYG 180 DNCTFLHDEQ SKNRESVAIS LGPGGYGGGG GGGGGGGGGG GGGGGGGGGN TGSNAVNVKP 240 SNWKTRICNK WELTGYCPFG NKCHFAHGAG ELHRYGGGLV DMDAKDSAFF PVESKQGGVP 300 SKTPPETVVT SVTSVPNSDV YVQSQKSSIL IQRPGQRTHQ KWKGPDKISR IYGDWIDDIE 360 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0555s0090.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018543.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X2 | ||||
Swissprot | Q84UQ3 | 1e-123 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | U5GRB7 | 0.0 | U5GRB7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s02330.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-115 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0555s0090.2.p |