PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0525s0060.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 362aa MW: 41637.2 Da PI: 7.0862 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.5 | 1e-17 | 32 | 114 | 10 | 98 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ ++l +p +f +h +kk+ +tl+ +sg +W+v+l + +++++ GW+eFvk++ L+e+D ++Fk++g+s+f v + SapurV1A.0525s0060.2.p 32 AGFDHQLPIPETFS-NH-LKKKLLENVTLKGPSGSTWQVEL--AADDVTMFFKHGWEEFVKDHFLEENDLLIFKYNGESNF--DVLI 112 5566789******7.44.44557779***************..999999***************************99999..8888 PP E- CS B3 97 fr 98 f+ SapurV1A.0525s0060.2.p 113 FD 114 87 PP | |||||||
2 | B3 | 50.6 | 3.6e-16 | 262 | 357 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+ +++p +v ++ +v+p ++h +k++++ + ++W+ ++ y+k++++ l++GWk+F+ +n+L+e D+++F+ +g+ SapurV1A.0525s0060.2.p 262 FVVIMKPTHVYRKFYMVIPSAWSTRHFRT--LEKKVVILRVKENTWNTNFLYDKYKNSGGLSSGWKSFALDNNLQEFDVCLFEPSGT 346 78899*********************744..6679***********************99***********************8877 PP ..SEE..EEEE CS B3 88 ..sefelvvkv 96 ++ l+v++ SapurV1A.0525s0060.2.p 347 mnNSIVLYVHI 357 32333455555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-19 | 23 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.889 | 23 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.19E-18 | 25 | 114 | No hit | No description |
SMART | SM01019 | 1.7E-14 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-20 | 26 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.0E-15 | 33 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-20 | 256 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-19 | 259 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.30E-21 | 262 | 359 | No hit | No description |
PROSITE profile | PS50863 | 11.97 | 262 | 361 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-14 | 262 | 361 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-15 | 262 | 359 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MGEETCEDCR SWEEELYWTH FQCTRFSQIL SAGFDHQLPI PETFSNHLKK KLLENVTLKG 60 PSGSTWQVEL AADDVTMFFK HGWEEFVKDH FLEENDLLIF KYNGESNFDV LIFDGQSLCE 120 KAASYFVRKC GHREGDSLVQ TKRKTVEDSV EVTYTCPHNG LGGTPEKSAY GYIYRTPVRN 180 TVVSKAIDKK TRREIKFGKP IQTRKSVRYE GPSSTAEEIE TKPDVWHVPI GMPDVSIGRI 240 VTEEDKLNAL RFAQTAQTND GFVVIMKPTH VYRKFYMVIP SAWSTRHFRT LEKKVVILRV 300 KENTWNTNFL YDKYKNSGGL SSGWKSFALD NNLQEFDVCL FEPSGTMNNS IVLYVHIFRV 360 I* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0525s0060.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441262.1 | 0.0 | B3 domain-containing protein REM16 isoform X2 | ||||
TrEMBL | A0A2K1XQ19 | 0.0 | A0A2K1XQ19_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_010400m | 1e-160 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-81 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0525s0060.2.p |