PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0525s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 362aa    MW: 41637.2 Da    PI: 7.0862
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0525s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-17321141098
                             HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                      B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                             ++  ++l +p +f  +h +kk+    +tl+ +sg +W+v+l     + +++++ GW+eFvk++ L+e+D ++Fk++g+s+f   v +
  SapurV1A.0525s0060.1.p  32 AGFDHQLPIPETFS-NH-LKKKLLENVTLKGPSGSTWQVEL--AADDVTMFFKHGWEEFVKDHFLEENDLLIFKYNGESNF--DVLI 112
                             5566789******7.44.44557779***************..999999***************************99999..8888 PP

                             E- CS
                      B3  97 fr 98 
                             f+
  SapurV1A.0525s0060.1.p 113 FD 114
                             87 PP
2B350.63.6e-16262357196
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             f+ +++p +v ++  +v+p    ++h      +k++++   + ++W+ ++ y+k++++  l++GWk+F+ +n+L+e D+++F+ +g+
  SapurV1A.0525s0060.1.p 262 FVVIMKPTHVYRKFYMVIPSAWSTRHFRT--LEKKVVILRVKENTWNTNFLYDKYKNSGGLSSGWKSFALDNNLQEFDVCLFEPSGT 346
                             78899*********************744..6679***********************99***********************8877 PP

                             ..SEE..EEEE CS
                      B3  88 ..sefelvvkv 96 
                               ++  l+v++
  SapurV1A.0525s0060.1.p 347 mnNSIVLYVHI 357
                             32333455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-1923114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.88923116IPR003340B3 DNA binding domain
CDDcd100171.19E-1825114No hitNo description
SMARTSM010191.7E-1426116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-2026114IPR015300DNA-binding pseudobarrel domain
PfamPF023629.0E-1533114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-20256359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-19259359IPR015300DNA-binding pseudobarrel domain
CDDcd100175.30E-21262359No hitNo description
PROSITE profilePS5086311.97262361IPR003340B3 DNA binding domain
SMARTSM010191.2E-14262361IPR003340B3 DNA binding domain
PfamPF023629.4E-15262359IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGEETCEDCR SWEEELYWTH FQCTRFSQIL SAGFDHQLPI PETFSNHLKK KLLENVTLKG  60
PSGSTWQVEL AADDVTMFFK HGWEEFVKDH FLEENDLLIF KYNGESNFDV LIFDGQSLCE  120
KAASYFVRKC GHREGDSLVQ TKRKTVEDSV EVTYTCPHNG LGGTPEKSAY GYIYRTPVRN  180
TVVSKAIDKK TRREIKFGKP IQTRKSVRYE GPSSTAEEIE TKPDVWHVPI GMPDVSIGRI  240
VTEEDKLNAL RFAQTAQTND GFVVIMKPTH VYRKFYMVIP SAWSTRHFRT LEKKVVILRV  300
KENTWNTNFL YDKYKNSGGL SSGWKSFALD NNLQEFDVCL FEPSGTMNNS IVLYVHIFRV  360
I*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0525s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441262.10.0B3 domain-containing protein REM16 isoform X2
TrEMBLA0A2K1XQ190.0A0A2K1XQ19_POPTR; Uncharacterized protein
STRINGcassava4.1_010400m1e-160(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-81B3 family protein