PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0518s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 350aa    MW: 38285.1 Da    PI: 6.5945
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0518s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11.1e-17253286134
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                             C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  SapurV1A.0518s0130.1.p 253 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 286
                             99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.2E-745338IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.609247283IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-16247297IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15251310No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14251284IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.84E-14252299No hitNo description
PROSITE patternPS003440253278IPR000679Zinc finger, GATA-type
PfamPF003202.4E-15253286IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MIGQTNASSS FLDEIDCGSF FDHIDDLLDF PSDDVDATLP DCTTTNNHPS CFIDNDDNSF  60
PGIWSTQPDS LPGSASALSA ELSVPYEDIV QLEWLSNFVE DSFSGGSLTM KKEESAFVDK  120
KDSTPHHQFQ TSSPVSVLES SSSCSGEKNA PEVVACGKRG RARSKRPRPA TFTPRPAMQL  180
ISPTSSITEV PQQLVSPRVP SDSENFAESR LVIKIPKHVD PEHKKKKKIK FTVPLGAVEL  240
NQNSPPQQAV RKCMHCEITK TPQWRAGPMG PKTLCNACGV RYKSGRLFPE YRPAASPTFV  300
PSLHSNSHKK VVEMRTKSGE RITASRPATM MVNSPELIPN ESSPAMDFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164168KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0518s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0106880.0LC010688.1 Populus nigra PniGATA8a mRNA for GATA type zinc finger domain, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316371.30.0GATA transcription factor 8
TrEMBLA0A2I4KL320.0A0A2I4KL32_POPTR; GATA transcription factor
TrEMBLA0A2K1YYK80.0A0A2K1YYK8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s23010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-50GATA family protein