PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0507s0120.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 353aa    MW: 37840.8 Da    PI: 4.7117
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0507s0120.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.8e-36401312102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y++++d+++++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++
  SapurV1A.0507s0120.2.p  40 FLTKTYQLVDDPSVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVIPDR---------WEFANDCFRR 117
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+k ll++i+r+k 
  SapurV1A.0507s0120.2.p 118 GEKALLRDIQRRKI 131
                             ***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5836129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3637129IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.0E-3837129IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.3E-214063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.0E-3240129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-217890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-2191103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MPPLPVEQTG ESPAACVSGA AAGGPPSGSG DSQRSLPTPF LTKTYQLVDD PSVDDLISWN  60
DDGSTFIVWR PAEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVIPDRWEF ANDCFRRGEK  120
ALLRDIQRRK ISPMGASVAT SASVTVAAVP SVARAVSPAN SGDDQGISST SSPGGAGTAG  180
GANSLHRTTS CTTTPEILEE NERLRKENSA LSHELTQLRG LCNNIMVLMN NYASPQLEGN  240
SGNNSNNNLT DVKTALELLP VDEEVVVSGG PRGGAAVTEE EVSPRLFGVS IGFKRVRIVD  300
EEEEEGRPQV GKCSNRQQTE GKEQGSDVKA EQLDGSSGNS DNQDQRWLEL GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-28181295129Heat shock factor protein 1
5d5v_B9e-28181295129Heat shock factor protein 1
5d5v_D9e-28181295129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0507s0120.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140070.0KP014007.1 Populus simonii heat shock transcription factor B2b (HsfB2b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029218.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_011029219.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D31e-98HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLB9GKL40.0B9GKL4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s08990.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-68heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]