PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0498s0250.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Nin-like | ||||||||
Protein Properties | Length: 254aa MW: 29500.7 Da PI: 6.2676 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.2 | 5.1e-26 | 144 | 192 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++le+++k+Fs+pi++AA+e++v+lTvLK++CR++ I+RWPhRkiksl SapurV1A.0498s0250.1.p 144 ALELEEIQKHFSMPITQAAREMKVGLTVLKKRCRELKIMRWPHRKIKSL 192 689********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.95 | 127 | 214 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.9E-23 | 145 | 192 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MENPPHFDGW PCLGVDDDQD NFQKISELSP FESLFDPSIF LPFGKNINEF KPLEDISDDN 60 IFSESNLESW YNRENASIIR KPVLNPSIHA SFGQNFDSNV IRCADHLEDF SMLWVQSDCA 120 SSSSMKEEEE EESRKMSGRK RSVALELEEI QKHFSMPITQ AAREMKVGLT VLKKRCRELK 180 IMRWPHRKIK SLNSLINNVK EMGLGEYETI MLEEHKKLIE KLPDVELTER TKRLRQACFK 240 ANYKKRRLAA PYP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0498s0250.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321399.3 | 1e-134 | protein RKD4 | ||||
TrEMBL | A0A2K1XGA6 | 1e-133 | A0A2K1XGA6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s01410.1 | 1e-135 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 7e-41 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0498s0250.1.p |