PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0498s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Dof | ||||||||
Protein Properties | Length: 258aa MW: 28331.5 Da PI: 8.9333 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.3 | 9.6e-40 | 33 | 94 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss SapurV1A.0498s0050.1.p 33 KDQALNCPRCTSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 94 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-27 | 25 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.5E-34 | 34 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.022 | 37 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 39 | 75 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDETPTQWPQ GINGVVKSME GPDMLERRAR PQKDQALNCP RCTSTNTKFC YYNNYSLSQP 60 RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSSSNPSSSA AVAAEKKFPL DLTQANFPQS 120 ATQNPKIHEG PDLNLAYPPS HISAMELLKS AGMSPRGFNA FMSIPAASDS NNMFSTGFPL 180 QEFKPSTQNF SLEGFESGYS NIQGVHDQSR SGARLLFPIE DLKQQVPSNS SGFERNTRGQ 240 GDSALGYWNG MLGGESW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0498s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ402844 | 0.0 | FJ402844.1 Populus tomentosa Dof1 (Dof1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321982.1 | 1e-154 | dof zinc finger protein 1 | ||||
TrEMBL | B9IDM4 | 1e-153 | B9IDM4_POPTR; Dof family protein | ||||
STRING | POPTR_0015s01160.1 | 1e-154 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 6e-47 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0498s0050.1.p |