PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0477s0260.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 574aa MW: 62512.7 Da PI: 6.2057 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28 | 3.9e-09 | 368 | 415 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq SapurV1A.0477s0260.1.p 368 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 415 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.02E-10 | 362 | 419 | No hit | No description |
SuperFamily | SSF47459 | 7.33E-17 | 362 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 364 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 364 | 432 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-6 | 368 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 370 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MESEYFFNAG VPPQALLFEQ TSTSSSMPIW QSHSSPMEMQ DNCSSHCLLN STWEKSTGHG 60 PHLESTLSSM VSSPGVANCN VSGESFIFRE LIGKLGNIGN SNNPGEISPH SQLMLAASYF 120 TAANNSANTS CYTTPLSSPP KLNMPAMDQF SKEHLNIPSL GKPMGLNSSV AEFTADPGFA 180 ERAAKFSCFG SRSFNGRISQ LGLNNAEMAK GCNPMMGNGK LPRVASSPLL KAAESQKRDR 240 SSPLQDRSDL TNSQESSVSE QIPSGEAGVK ASNELNSRKR KALSRGKTKE SASNPPVNAT 300 KDAETDENSN AKRIKPNEGE ENEIDPVKAE EEPKGSGDDS QNKANSKPPE PPKDYIHVRA 360 RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF 420 LSMKLASVNT RLDFNMDTLI SKDMFQSSQP LPHPMFPSDS SASAAIFGHQ QQPNPPLHSN 480 ISNGAATHCS MDPLDTAGLC RNLNTQLPPL DGFTENAHQY PTFCEDDLQT IVQMGFGQNP 540 SLETFPPQNF QGKERETEIK LRTSLRTYES SCS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00660 | PBM | Transfer from Pp3c6_9520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0477s0260.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303073.2 | 0.0 | transcription factor bHLH62 | ||||
TrEMBL | B9GQN9 | 0.0 | B9GQN9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s24990.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2530 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-119 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0477s0260.1.p |