PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0459s0190.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 173aa MW: 19406.1 Da PI: 8.221 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.6 | 1.3e-19 | 32 | 122 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffkvl + s +l++p kf+ + ++ ++++ led+sg++W+vk+ + +++vl++GW+eF++++gL+ gDf++F ++ SapurV1A.0459s0190.1.p 32 FFKVL--IGDMFSTILYFPPKFTPTVSSL--NGQETFLEDSSGQRWKVKV--SVLNDSFVLQEGWSEFASDHGLELGDFIIFNYIMG 112 77888..44455557*******9998544..45689**************..666667**************************977 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 s f v++++k SapurV1A.0459s0190.1.p 113 SHF--EVHIYDK 122 888..8888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-23 | 29 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-23 | 30 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.761 | 30 | 123 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.11E-20 | 31 | 121 | No hit | No description |
Pfam | PF02362 | 1.0E-17 | 32 | 122 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-10 | 32 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MSSKVEACPM CTQSCLMTHG NKTNSRTLVS SFFKVLIGDM FSTILYFPPK FTPTVSSLNG 60 QETFLEDSSG QRWKVKVSVL NDSFVLQEGW SEFASDHGLE LGDFIIFNYI MGSHFEVHIY 120 DKSACERLDF SERRNQTTPN LAGEEICRGQ SKLKNHVLKA KMVAKNTSTN KK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0459s0190.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011040418.1 | 1e-111 | PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1 | ||||
Refseq | XP_011040419.1 | 1e-111 | PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1 | ||||
Refseq | XP_011040420.1 | 1e-111 | PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1 | ||||
Refseq | XP_011040421.1 | 1e-111 | PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X1 | ||||
TrEMBL | B9I3L4 | 1e-109 | B9I3L4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s09470.1 | 1e-110 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12476 | 28 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18960.1 | 6e-15 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0459s0190.1.p |