PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0450s0140.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 260aa MW: 29461.1 Da PI: 6.2589

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0450s0140.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	148.8	2.8e-46	18	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 lp GfrF Pt+eel+++yL++k+eg++ e + i+++ iy++ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgy SapurV1A.0450s0140.1.p 18 LPLGFRFYPTEEELISFYLHNKLEGERQERMQLvIPDISIYDIEPWDLPKlsgqLCQGDTEQWFFFAPRQEREARGGRPNRTTASGY 104 699*********************97665655***********656754455777********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg+ +v+s++++++glkkt+vfy+g+ap+g+kt+W m+eyr+ SapurV1A.0450s0140.1.p 105 WKATGSPGHVYSSDNRVIGLKKTMVFYTGKAPSGRKTKWKMNEYRA 150 ******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-49	14	174	IPR003441	NAC domain
PROSITE profile	PS51005	49.016	18	176	IPR003441	NAC domain
Pfam	PF02365	4.8E-24	19	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MLIQLRLTRE QDKKMEELPL GFRFYPTEEE LISFYLHNKL EGERQERMQL VIPDISIYDI 60 EPWDLPKLSG QLCQGDTEQW FFFAPRQERE ARGGRPNRTT ASGYWKATGS PGHVYSSDNR 120 VIGLKKTMVF YTGKAPSGRK TKWKMNEYRA IEVHELSNNA TPQLRHEFSL CRVYVISGSF 180 RAFDRRPQEA VSRETQLLGG AATSSVHGPP PVDMTSSPET SYSVEDHVDN PGPAESASWG 240 TVVGLAPPAW DWPGQLDWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-35	18	174	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-35	18	174	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-35	18	174	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-35	18	174	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	3e-35	18	174	20	166	NAC domain-containing protein 19
3swm_B	3e-35	18	174	20	166	NAC domain-containing protein 19
3swm_C	3e-35	18	174	20	166	NAC domain-containing protein 19
3swm_D	3e-35	18	174	20	166	NAC domain-containing protein 19
3swp_A	3e-35	18	174	20	166	NAC domain-containing protein 19
3swp_B	3e-35	18	174	20	166	NAC domain-containing protein 19
3swp_C	3e-35	18	174	20	166	NAC domain-containing protein 19
3swp_D	3e-35	18	174	20	166	NAC domain-containing protein 19
4dul_A	3e-35	18	174	17	163	NAC domain-containing protein 19
4dul_B	3e-35	18	174	17	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0450s0140.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298277.2	1e-167	NAC domain-containing protein 90
Swissprot	Q9FMR3	2e-92	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2K2C1M7	1e-165	A0A2K2C1M7_POPTR; Uncharacterized protein
STRING	POPTR_0001s22630.1	1e-160	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	8e-95	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	SapurV1A.0450s0140.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]