PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0433s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 598aa    MW: 65678.6 Da    PI: 7.0036
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0433s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.6e-32261318260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kk +ers  d++v+ei+Y+g+Hnh+k
  SapurV1A.0433s0130.1.p 261 DDGYNWRKYGQKQVKGSENPRSYYKCTHPNCPTKKILERSL-DGQVTEIVYKGTHNHPK 318
                             8****************************************.***************85 PP
2WRKY105.13.6e-33436494159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  SapurV1A.0433s0130.1.p 436 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYQGCPVRKHVERASHDLRAVITTYEGKHNHD 494
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-27247319IPR003657WRKY domain
PROSITE profilePS5081123.261255319IPR003657WRKY domain
SuperFamilySSF1182906.41E-25255319IPR003657WRKY domain
SMARTSM007743.3E-35260318IPR003657WRKY domain
PfamPF031061.2E-24261317IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-37421496IPR003657WRKY domain
SuperFamilySSF1182901.57E-29428496IPR003657WRKY domain
PROSITE profilePS5081138.377431496IPR003657WRKY domain
SMARTSM007741.9E-39436495IPR003657WRKY domain
PfamPF031067.4E-26437494IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MASSPGSLDT YANSHSEGSN NYFSFTTNSS SHYPFMTSSS SSSFTDLLAS SDEEPKNRIT  60
NNSKLSDRIA ERTGSGVPKF KSIPPPSLPL SPPPVSPSSY FAIPAGLSPA ELLDSPVLLN  120
PSNILPSPTT GTFPAQAFNW KSSSGNSLQN VKKEDKAFSN FSFQQPARQP TTSSAIFQSS  180
NSTIQPEQQQ TWGFQESAKQ EAFVSERNSM VKMEYDSNSL QGFSPEIAAI QTDPQSNNGF  240
QSDYGNQQQQ YQSVREQRRS DDGYNWRKYG QKQVKGSENP RSYYKCTHPN CPTKKILERS  300
LDGQVTEIVY KGTHNHPKPQ STRRSSSSIT ASNLGMIPAA TNSNPNEIHE QSYVTRGSGQ  360
MDSSVATPEN SSFSVGDDDF DSQKSKSGGG DDFDEDETEA KRWKREGDSE GISAPGSKAV  420
REPRVVVQTT SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTYQGCPVR KHVERASHDL  480
RAVITTYEGK HNHDVPAARG SGSRSLSDHS NHAAMAIRPS AVNHVSRNSI DNPVRDQRVP  540
TTTSEGELPF TLEMLQQSPG NFGFSGYGNL TGSYLNQSST DEVFSRAKRE LGVESLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-36252497878Probable WRKY transcription factor 4
2lex_A6e-36252497878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0433s0130.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774240.0GQ377424.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002326093.30.0LOW QUALITY PROTEIN: WRKY transcription factor WRKY24
SwissprotQ6B6R41e-133WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLC9DHZ30.0C9DHZ3_9ROSI; WRKY transcription factor 4
STRINGPOPTR_0019s14460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.14e-99WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]