PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0428s0090.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 285aa MW: 31580.6 Da PI: 6.0269

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0428s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.7	8.2e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vhk+FGasnv kll++l+ +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l SapurV1A.0428s0090.1.p 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFASVHKVFGASNVAKLLNELSAAQREDAVNSLAYEAEERLRDPVYGCVGLISILQQRL 93 7************************************************************************************ PP DUF260 88 eqlkaelallkee 100 +ql+++l ++k+e SapurV1A.0428s0090.1.p 94 KQLQNDLYSAKKE 106 *****999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.653	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFASVH KVFGASNVAK LLNELSAAQR 60 EDAVNSLAYE AEERLRDPVY GCVGLISILQ QRLKQLQNDL YSAKKELVNY IEGQAMLPML 120 MQPQHLGNSS FSNGMPMMGI PTAGQMGMRA DTHQHHQVNP QQIFEAQQLA AVVAARDQQE 180 MLRAYEQQQH TQAQQEIVRF HGGFEPANSV SAAGFNHMNP AAAMSPSLAL GTFDNTFQIQ 240 PQEEPQPNQL QEELLLQPQS QQPQQIFQHP KSETEEGRSV GPSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-51	3	114	7	118	LOB family transfactor Ramosa2.1
5ly0_B	9e-51	3	114	7	118	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0428s0090.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456992.1	1e-150	LOB domain-containing protein 36
Refseq	XP_024456993.1	1e-150	LOB domain-containing protein 36
Refseq	XP_024456994.1	1e-150	LOB domain-containing protein 36
Refseq	XP_024456995.1	1e-150	LOB domain-containing protein 36
Swissprot	Q9FKZ3	2e-81	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2I4KL02	1e-150	A0A2I4KL02_POPTR; LBD family protein
STRING	POPTR_0005s14150.1	1e-149	(Populus trichocarpa)
STRING	POPTR_0007s11460.1	1e-150	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-80	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	SapurV1A.0428s0090.1.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]