PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0423s0170.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 217aa MW: 24936 Da PI: 9.164 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.7 | 6.3e-21 | 78 | 137 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+++ r+p+ +++e+++++l +++ ++V++WFqN++a+e++ SapurV1A.0423s0170.1.p 78 TRWNPTQEQIGILEMLYRRgMRTPNGQQIEDITAQLsrygKIEGKNVFYWFQNHKARERQ 137 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 117 | 8.6e-38 | 78 | 139 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly++G+rtPn ++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq SapurV1A.0423s0170.1.p 78 TRWNPTQEQIGILEMLYRRGMRTPNGQQIEDITAQLSRYGKIEGKNVFYWFQNHKARERQKQ 139 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.22 | 73 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.5E-7 | 75 | 142 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-12 | 75 | 144 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.3E-18 | 78 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.61E-5 | 78 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-8 | 79 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MGSMKVHQLA RGFWEHDPAL TLGCKRLRPL APKLASTDHS VASFDLKSFI RPDSGPRKLA 60 SSDEKKDSPQ GETHPGGTRW NPTQEQIGIL EMLYRRGMRT PNGQQIEDIT AQLSRYGKIE 120 GKNVFYWFQN HKARERQKQK RNSLGLSHSP RTPSPITLIS LDTTRGEVEK DEDSPYKRKC 180 RSWSFECFEL EESRSWRDEE EGDRTLELFP LHPEGR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0423s0170.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF145702 | 0.0 | EF145702.1 Populus trichocarpa clone WS0112_M11 unknown mRNA. | |||
GenBank | KC691250 | 0.0 | KC691250.1 Populus x canadensis WUSCHEL-related homeobox 4 (WOX4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374903.1 | 1e-148 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q6X7J9 | 3e-73 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | B9MVU1 | 1e-147 | B9MVU1_POPTR; WOX family protein | ||||
TrEMBL | R9RIF3 | 1e-147 | R9RIF3_POPCA; WUSCHEL-related homeobox 4 | ||||
STRING | POPTR_0014s02540.1 | 1e-148 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6132 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G46480.1 | 1e-75 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0423s0170.1.p |