PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0406s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WOX | ||||||||
Protein Properties | Length: 384aa MW: 43082.7 Da PI: 7.1433 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.3 | 4.1e-21 | 83 | 142 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Le+l+++ +r+ps++++++++++l +++ ++V++WFqN++a+e++ SapurV1A.0406s0010.1.p 83 SRWNPTPEQLRTLEDLYRRgTRTPSTDQIQDITAQLrrygRIEGKNVFYWFQNHKARERQ 142 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115 | 3.7e-37 | 82 | 144 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Le+ly++G+rtP++++iq+ita+L++yG+ie+kNVfyWFQN+kaRerqk+ SapurV1A.0406s0010.1.p 82 SSRWNPTPEQLRTLEDLYRRGTRTPSTDQIQDITAQLRRYGRIEGKNVFYWFQNHKARERQKR 144 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.5E-5 | 80 | 147 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-8 | 83 | 142 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.04E-12 | 83 | 148 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-18 | 83 | 142 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.71E-6 | 84 | 144 | No hit | No description |
PROSITE profile | PS50071 | 10.948 | 88 | 143 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MWMMGYNDGG DFNISDSFNG RKLRPLVPRP IPSANNTPAA SSPPCPGGRL HNTDFFALNQ 60 YHLASMADQN KREFNTQPVV MSSRWNPTPE QLRTLEDLYR RGTRTPSTDQ IQDITAQLRR 120 YGRIEGKNVF YWFQNHKARE RQKRRRQMDS DSFDGHQQNE HGVEIFERKE SGASRTAYEG 180 EQTKNWAPST NCSALSEESV SISRATKGVM ADQYCAPDGW MQLDEGELQH RRNFIERNAT 240 WEMTQLSCPS PTHLINTISS TTTTSMSKKA AAAAVRSMDP TMLIKAHDLN VFIAPYRENG 300 HHGALINHFN GSLINGGGDE SRGGTGESHQ TLQLFPLRSG GDGSNDIENI NRRETELSVS 360 AAEAFNANNF SPCQFFEFLP LKN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0406s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF982700 | 0.0 | KF982700.1 Populus tomentosa WOX1b (WOX1b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024442258.1 | 0.0 | WUSCHEL-related homeobox 1 | ||||
TrEMBL | W8PIJ9 | 0.0 | W8PIJ9_POPTO; WOX1b | ||||
STRING | POPTR_0015s04520.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2892 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 2e-58 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0406s0010.1.p |