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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SapurV1A.0404s0280.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family |
GRAS |
| Protein Properties |
Length: 536aa MW: 60547.9 Da PI: 4.6824 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0404s0280.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 358.9 | 7.2e-110 | 157 | 528 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalk 82
l +lLl+cAea+ +d++la+++L ++ +sp gd++qR+ +f+ +L+ rl++ +++ + + ++ ++ +e++ a++
SapurV1A.0404s0280.1.p 157 LLHLLLACAEALGCRDTRLAETMLGQIWPSVSPWGDSLQRVSYCFAMGLKCRLSH-LNNVNANGTFTNGGAMDrsliiREEKMEAFH 242
579***************************************************9.555554444444444445578889999999* PP
GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
l+++ +P++ f++++aN+aI +a+++++++HiiD+++++ lQWp+L++aLasRpegpp+lRiTg+ + +++ ele+ + La+ A
SapurV1A.0404s0280.1.p 243 LLHQKTPYIAFGFMAANEAICQAAQEKDTLHIIDLGMEHALQWPSLMRALASRPEGPPKLRITGLTD--EHNLSELETSMKELAEEA 327
*******************************************************************..55999************* PP
GRAS 170 eelgvpfefnvlvak..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
++lg+++efn++ ++ + l+ e+L++++gEal n++++lhr+++es + + ++L+++k+l+P +++vveq+a+hn++ Fl
SapurV1A.0404s0280.1.p 328 SSLGIRLEFNMI-SDpvTPLLLTAENLKLREGEALFFNSIMHLHRFVKESRGSLK---AILQAIKRLNPALLTVVEQDANHNGPFFL 410
***********5.6623555679************************88777666...9**************************** PP
GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
rf+e+l+yysa++dslea+lpr+s +r+k+E++ + +ei+n++a eg +r+erhe++ +Wr++l++aGF+ + l+ ++qa+ +l
SapurV1A.0404s0280.1.p 411 GRFIESLHYYSAILDSLEASLPRNSPQRMKIEKVKFCKEICNIIAYEGCNRTERHERVDRWRRQLSRAGFQVMGLK--CMSQARVML 495
************************************************************************9985..89******* PP
GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ ++ dgy++ e+g+l+lgWk+rp++ +SaW+
SapurV1A.0404s0280.1.p 496 SVYGIDGYTLATEKGCLLLGWKGRPIMLASAWQ 528
********************************6 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 536 aa
Download sequence Send
to blast |
MDGMDDWLSF SMQESLDHDL AIRRFCPARM ELEQGEESWE EITFSEIELL SPDDDSTGPP 60
HLAASEVDEL VDSFINVDQD GDKDNKSHEK DQEFKQFQDD NIEGFSMLDD VFPDVPMMSI 120
EGDELEMRSS FEDPEAVPYT EPVQEKITQG VDQGLHLLHL LLACAEALGC RDTRLAETML 180
GQIWPSVSPW GDSLQRVSYC FAMGLKCRLS HLNNVNANGT FTNGGAMDRS LIIREEKMEA 240
FHLLHQKTPY IAFGFMAANE AICQAAQEKD TLHIIDLGME HALQWPSLMR ALASRPEGPP 300
KLRITGLTDE HNLSELETSM KELAEEASSL GIRLEFNMIS DPVTPLLLTA ENLKLREGEA 360
LFFNSIMHLH RFVKESRGSL KAILQAIKRL NPALLTVVEQ DANHNGPFFL GRFIESLHYY 420
SAILDSLEAS LPRNSPQRMK IEKVKFCKEI CNIIAYEGCN RTERHERVDR WRRQLSRAGF 480
QVMGLKCMSQ ARVMLSVYGI DGYTLATEKG CLLLGWKGRP IMLASAWQVH NLFSS*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 469 | 476 | RWRRQLSR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC216770 | 0.0 | AC216770.1 Populus trichocarpa clone POP051-A24, complete sequence. |
