PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0403s0170.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

CAMTA

Protein Properties

Length: 1093aa MW: 123386 Da PI: 5.7468

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0403s0170.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	178	1.2e-55	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 ++ ++rwl++ ei++iL n++k++++ e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+ SapurV1A.0403s0170.1.p 20 VEAQNRWLRPAEIVEILSNYQKFRIAPEPAHMPSSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKCGSIDVLHCYYAHG 106 6679********************************************************************************* PP CG-1 89 eenptfqrrcywlLeeelekivlvhylevk 118 e+n++fqrr+yw+Leeel++ivlvhy+evk SapurV1A.0403s0170.1.p 107 EDNENFQRRSYWMLEEELSHIVLVHYREVK 136 *************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	80.494	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.5E-76	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.8E-48	21	134	IPR005559	CG-1 DNA-binding domain
Pfam	PF01833	5.9E-5	513	596	IPR002909	IPT domain
SuperFamily	SSF81296	6.02E-15	513	599	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	2.2E-13	695	806	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.663	696	815	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	8.27E-10	696	803	No hit	No description
SuperFamily	SSF48403	2.21E-12	702	805	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF52540	1.14E-7	914	968	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	2	917	939	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0046	920	938	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.206	920	947	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0039	940	962	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.597	941	965	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.2E-4	943	962	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1093 aa Download sequence Send to blast
MADSRRYPLG NQLDIQQILV EAQNRWLRPA EIVEILSNYQ KFRIAPEPAH MPSSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKCGSIDVLH CYYAHGEDNE NFQRRSYWML 120 EEELSHIVLV HYREVKGTRT NFSRVKEYEE PIPYSQETED TMPNSEMDTS VSSSFHSNGY 180 QVPTRTTDST SMNSALASEY EDAESGYNNQ ASSRFNSFFK AQKHPMEKID TGASIPYDHM 240 LFSSDYQGKL PAVSVNEFIS PAQVDTAKDI NGTQPASEPH KVLDLPSWED VLENCSRGTE 300 CMPYQTTLLS QVDTVGFIPK QEEDILEKFL TNSFNKKQDI GSHLLDQEAW QTIEGGYLHR 360 SKWSMDQKSH LDSGYDLTAR FHDQQLDSGN LINTFESFYA QENDGHIQND LQIQPANSDH 420 GMTLEGKAIH SASMKQHILE DSGTEGLKKL DSFTRWMSKE LEDVDQPHLQ SSSGTCWTMA 480 ESENVVDADN PSRGHLFTDM LGPSLSQDQL FSIIDFLPNW AYAGTEIKVL VMGRFLKCQE 540 EAENFKWSIM FGEVEVPAEF IADGVLCCTT PSHKDGRVPF YVTCSNRVAC SEVREFEYRP 600 IHLQDITNNY INSATEDLHM GLAKMLSLNS ASPSKYDSSN IEEISQLSNK ISSLLKEGNE 660 TWDQMIKLTS QEGFYSEKLK DLLLQKVLKE QLHAWLLQKV AEGGKGPSVL DEGGQGVLHF 720 AAALGYEWAL EPTVVAGVSV NFRNVNGWTA LHWAASYERT VASLIHLGAA PGALTDPTPK 780 YPTGRTPADL ASANGHKGIS GFLAESALSA HLSSLNLEKQ DGDAAESSRI PALLTVSDCN 840 ETPFNDADLP CGLSLKDSLA AVCNATQAAA RIHQVFRVQS FQKKQLKEYG DDKHGMSHER 900 ALSLIAVKSQ KAGQYDEPVH AAIRIQNKFR GWKGRKEFLI IRQRIVKIQA HVRGHQVRKN 960 YRKIIWSVGI LDKIILRWRR KGSGLRGFKP EALTEGSSMQ IVSSKDDDDD FLKEGRKQTE 1020 ERSRIALARV KSMHQHPEAR EQYHRLRNVI AEIQETKAMY EWADNSEVMA EFDDLIDLET 1080 LWDGDTFMPT DS*

Sequence ? help Back to Top

Protein Sequence Length: 1093 aa Download sequence Send to blast

MADSRRYPLG NQLDIQQILV EAQNRWLRPA EIVEILSNYQ KFRIAPEPAH MPSSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKCGSIDVLH CYYAHGEDNE NFQRRSYWML  120
EEELSHIVLV HYREVKGTRT NFSRVKEYEE PIPYSQETED TMPNSEMDTS VSSSFHSNGY  180
QVPTRTTDST SMNSALASEY EDAESGYNNQ ASSRFNSFFK AQKHPMEKID TGASIPYDHM  240
LFSSDYQGKL PAVSVNEFIS PAQVDTAKDI NGTQPASEPH KVLDLPSWED VLENCSRGTE  300
CMPYQTTLLS QVDTVGFIPK QEEDILEKFL TNSFNKKQDI GSHLLDQEAW QTIEGGYLHR  360
SKWSMDQKSH LDSGYDLTAR FHDQQLDSGN LINTFESFYA QENDGHIQND LQIQPANSDH  420
GMTLEGKAIH SASMKQHILE DSGTEGLKKL DSFTRWMSKE LEDVDQPHLQ SSSGTCWTMA  480
ESENVVDADN PSRGHLFTDM LGPSLSQDQL FSIIDFLPNW AYAGTEIKVL VMGRFLKCQE  540
EAENFKWSIM FGEVEVPAEF IADGVLCCTT PSHKDGRVPF YVTCSNRVAC SEVREFEYRP  600
IHLQDITNNY INSATEDLHM GLAKMLSLNS ASPSKYDSSN IEEISQLSNK ISSLLKEGNE  660
TWDQMIKLTS QEGFYSEKLK DLLLQKVLKE QLHAWLLQKV AEGGKGPSVL DEGGQGVLHF  720
AAALGYEWAL EPTVVAGVSV NFRNVNGWTA LHWAASYERT VASLIHLGAA PGALTDPTPK  780
YPTGRTPADL ASANGHKGIS GFLAESALSA HLSSLNLEKQ DGDAAESSRI PALLTVSDCN  840
ETPFNDADLP CGLSLKDSLA AVCNATQAAA RIHQVFRVQS FQKKQLKEYG DDKHGMSHER  900
ALSLIAVKSQ KAGQYDEPVH AAIRIQNKFR GWKGRKEFLI IRQRIVKIQA HVRGHQVRKN  960
YRKIIWSVGI LDKIILRWRR KGSGLRGFKP EALTEGSSMQ IVSSKDDDDD FLKEGRKQTE  1020
ERSRIALARV KSMHQHPEAR EQYHRLRNVI AEIQETKAMY EWADNSEVMA EFDDLIDLET  1080
LWDGDTFMPT DS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0403s0170.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456348.1	0.0	calmodulin-binding transcription activator 3 isoform X1
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A2K2AD13	0.0	A0A2K2AD13_POPTR; Uncharacterized protein
STRING	POPTR_0007s05410.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8284	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	SapurV1A.0403s0170.1.p

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]