PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0400s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 450aa    MW: 49052.2 Da    PI: 7.3682
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0400s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-08127147526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              C+f+ + G C++Gd+C++ H+
  SapurV1A.0400s0100.1.p 127 VCNFWVQ-GNCSFGDKCRYLHS 147
                             7******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.923965IPR000571Zinc finger, CCCH-type
SMARTSM003560.774164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258123149IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-5124148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7125147IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5126147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-6126143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.3E-17144258IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.9E-5153192IPR001680WD40 repeat
SuperFamilySSF509784.52E-47154440IPR017986WD40-repeat-containing domain
PfamPF004002.9E-4156192IPR001680WD40 repeat
PROSITE profilePS5008214.218160201IPR001680WD40 repeat
PROSITE profilePS5029421.357160409IPR017986WD40-repeat-containing domain
PROSITE patternPS006780179193IPR019775WD40 repeat, conserved site
PRINTSPR003205.1E-6179193IPR020472G-protein beta WD-40 repeat
SMARTSM003202.7232269IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.5E-30259440IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.019276313IPR001680WD40 repeat
PROSITE profilePS5008210.976283322IPR001680WD40 repeat
PRINTSPR003205.1E-6300314IPR020472G-protein beta WD-40 repeat
SMARTSM003205.3E-4316353IPR001680WD40 repeat
PfamPF004000.011318352IPR001680WD40 repeat
PRINTSPR003205.1E-6340354IPR020472G-protein beta WD-40 repeat
SMARTSM003208.6357400IPR001680WD40 repeat
SMARTSM003205.6403440IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDLDYNGGNT TTTNKRVFHR IGGGQSVNDT SNQHNHQHQQ NQKVCYHWRA GKCNRFPCPF  60
LHRELPAPPP HAYLNGGEGG AKRGFAGNDS SSFSGRRGGN SNYSNSRGRF GNKGDIRGVK  120
RVNVEKVCNF WVQGNCSFGD KCRYLHSWSL GDGFSLLTQL EGHQKVISGI ALPSGSDKLY  180
TGSKDETVRV WDCQSGQCMH VINLGGEVGC MISEGPWIFV GLPNVVKAWN TQTNTDLSLD  240
GPIGQVYALV VGNDLLFAGT QDGSILVWKF NAATFNFEPA VSLKDHKMAV VSLVVGANRL  300
YSGSIDHSIK VWSLETLQCI QTLTDHTSVV MSILCWEQFL LSCSLDQTIK VWAATESGNL  360
EVTYTHNEEH GLLTLCGMHD LDGKPVLLCS SNDNSVHLYD LPSFSEKGKM FAKQEIRAIQ  420
TGPGGLFFTG DGTGQVRVWN SVAVPTAAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-201484405323Tako8
6g6n_A2e-201484405323Tako8
6g6n_B2e-201484405323Tako8
6g6n_C2e-201484405323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0400s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030043.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
RefseqXP_011030044.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLB9I4E60.0B9I4E6_POPTR; Uncharacterized protein
STRINGPOPTR_0012s13800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1