PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0395s0230.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 771aa MW: 83037.7 Da PI: 6.1892 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.4 | 2.5e-32 | 305 | 362 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers +++++ei+Y+g+H h+k SapurV1A.0395s0230.2.p 305 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-EGHITEIIYKGTHSHPK 362 8****************************************.***************85 PP | |||||||
2 | WRKY | 35.3 | 2.4e-11 | 516 | 537 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vkg+++pr SapurV1A.0395s0230.2.p 516 LDDGYRWRKYGQKVVKGNPNPR 537 59*******************9 PP | |||||||
3 | WRKY | 51.9 | 1.5e-16 | 581 | 619 | 21 | 59 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+ SapurV1A.0395s0230.2.p 581 CRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 619 6*************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.14E-25 | 302 | 363 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-28 | 302 | 363 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.8E-36 | 304 | 362 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.687 | 305 | 363 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-25 | 305 | 361 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-34 | 501 | 536 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-9 | 508 | 537 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.561 | 511 | 621 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-31 | 516 | 620 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-7 | 517 | 537 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-11 | 580 | 619 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-13 | 581 | 621 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-34 | 582 | 621 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 771 aa Download sequence Send to blast |
MAGIDDNVAI IGDWVPPSPS PRAFFSAMLG DDINSRTITE PPGENRNEGL LLGQPEQMTT 60 GNAEKKDGAR SSGAQLIESG SFSEQKSNSR GGLVERMAAR AGFNAPRLNT ESIRSAETSL 120 NSEIRSPYLT IPPGLSPTTL LESPVFLSNL AQPSPTTGKF SFFPNGSSKS STVGSELPDK 180 SKETFFEDIN SSSFAFKPLG ESGSSFFLGG TSKQSFPGID VSVHSEDALQ SNDVEPSKVQ 240 SDSRNSLHFP AEFLGNTLAD QKTFDTVGGN AEHSSPLDEQ QDEEGDQRAT GDSMVAGGTG 300 GTPSDDGYNW RKYGQKQVKG SEYPRSYYKC THPNCPVKKK VERSLEGHIT EIIYKGTHSH 360 PKPPPNRRSA IGSLDTQLDI PEPAGPQIGS VNDSSWAGTH KGTVAGTSDW RRDNVEVTSS 420 ASGGPGPEFG NPSSSVQAQS GTPFESADAI DASSTFSNDE DDDRATHGSV GYDGEGEESE 480 SKRRKIETYA TEMSGATRAI REPRVVVQTT SEVDILDDGY RWRKYGQKVV KGNPNPRLSN 540 QHWPLAQTPH PQIIIKILIS CAEGKKINCS QSEFENRVIS CRSYYKCTSA GCTVRKHVER 600 ASHDLKSVIT TYEGKHNHDV PAARNSSHVN SGTSTAPPGQ AAISAQNHVH RPEPSQVHNS 660 MARFDRPPAF GSFSLPGRQQ LGPSPGFSFG MNQPGLANLA MAGLGPGQPK MPMMPIHPYL 720 AQQRPGNEMG FMMPKEEPKV EPVTEPSLNL SNNPTLYQQI MSRLPLGPQM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-29 | 305 | 622 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 7e-29 | 305 | 622 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0395s0230.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN117933 | 0.0 | JN117933.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY37) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007030.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 isoform X2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A1X9IXI9 | 0.0 | A0A1X9IXI9_POPTO; Uncharacterized protein | ||||
STRING | POPTR_0001s47670.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-179 | WRKY DNA-binding protein 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0395s0230.2.p |
Publications ? help Back to Top | |||
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