PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0395s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 779aa    MW: 83883.6 Da    PI: 6.1892
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0395s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.5e-32313370260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  +++++ei+Y+g+H h+k
  SapurV1A.0395s0230.1.p 313 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-EGHITEIIYKGTHSHPK 370
                             8****************************************.***************85 PP
2WRKY35.22.4e-11524545122
                             ---SS-EEEEEEE--TT-SS-E CS
                    WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                             ldDgy+WrKYGqK+vkg+++pr
  SapurV1A.0395s0230.1.p 524 LDDGYRWRKYGQKVVKGNPNPR 545
                             59*******************9 PP
3WRKY51.91.6e-165896272159
                             -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              rsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  SapurV1A.0395s0230.1.p 589 CRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 627
                             6*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-28310371IPR003657WRKY domain
SuperFamilySSF1182901.15E-25310371IPR003657WRKY domain
SMARTSM007748.8E-36312370IPR003657WRKY domain
PROSITE profilePS5081122.687313371IPR003657WRKY domain
PfamPF031065.6E-25313369IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-34509544IPR003657WRKY domain
SuperFamilySSF1182902.75E-9516545IPR003657WRKY domain
PROSITE profilePS5081130.561519629IPR003657WRKY domain
SMARTSM007741.3E-31524628IPR003657WRKY domain
PfamPF031067.0E-7525545IPR003657WRKY domain
PfamPF031066.1E-11588627IPR003657WRKY domain
SuperFamilySSF1182905.23E-13589629IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-34590629IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MAGIDDNVAI IGDWVPPSPS PRAFFSAMLG DDINSRTITE PPGENRNEGL LLGQPEQMTT  60
GNAEKKDGAR SSGAQLIESG SFSEQKSNSR GGLVERMAAR AGFNAPRLNT ESIRSAETSL  120
NSEIRSPYLT IPPGLSPTTL LESPVFLSNL AQPSPTTGKF SFFPNGSSKS STVGSELPDK  180
SKETFFEDIN SSSFAFKPLG ESGSSFFLGG TSKITSATFP QQSFPGIDVS VHSEDALQSN  240
DVEPSKVQSD SRNSLHFPAE FLGNTLADQK TFDTVGGNAE HSSPLDEQQD EEGDQRATGD  300
SMVAGGTGGT PSDDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSLEGHITEI  360
IYKGTHSHPK PPPNRRSAIG SLDTQLDIPE PAGPQIGSVN DSSWAGTHKG TVAGTSDWRR  420
DNVEVTSSAS GGPGPEFGNP SSSVQAQSGT PFESADAIDA SSTFSNDEDD DRATHGSVGY  480
DGEGEESESK RRKIETYATE MSGATRAIRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG  540
NPNPRLSNQH WPLAQTPHPQ IIIKILISCA EGKKINCSQS EFENRVISCR SYYKCTSAGC  600
TVRKHVERAS HDLKSVITTY EGKHNHDVPA ARNSSHVNSG TSTAPPGQAA ISAQNHVHRP  660
EPSQVHNSMA RFDRPPAFGS FSLPGRQQLG PSPGFSFGMN QPGLANLAMA GLGPGQPKMP  720
MMPIHPYLAQ QRPGNEMGFM MPKEEPKVEP VTEPSLNLSN NPTLYQQIMS RLPLGPQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-29313630878Probable WRKY transcription factor 4
2lex_A6e-29313630878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0395s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1179330.0JN117933.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY37) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007028.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
RefseqXP_011007029.10.0PREDICTED: probable WRKY transcription factor 2 isoform X1
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A2K2CEK50.0A0A2K2CEK5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s47670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-178WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]