PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0391s0280.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ZF-HD | ||||||||
Protein Properties | Length: 235aa MW: 26441.4 Da PI: 7.6522 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.4 | 5.5e-31 | 3 | 60 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++v+Y+eC++NhAas+Ggha DGCgEfmp+ g++ gt + l+CaACgCHRnFHRr+ + SapurV1A.0391s0280.1.p 3 QSVKYRECMRNHAASIGGHANDGCGEFMPHGGDDeGTRDWLTCAACGCHRNFHRRQGS 60 5799**************************99888********************866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.1E-28 | 5 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-16 | 6 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.7E-27 | 6 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.87 | 7 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.31E-16 | 137 | 205 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 138 | 205 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.5E-24 | 145 | 202 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDQSVKYREC MRNHAASIGG HANDGCGEFM PHGGDDEGTR DWLTCAACGC HRNFHRRQGS 60 DKRQHRQQLL LSPPPITQQF LLYGVPTSKN TNPVHDFIPR PHEDDDDLDD LDHDRRSETP 120 ERGEMDVMGS GGEGFMVKSA GSSSKRFRTN FTQEQKERML EFAEKIGWRR MRKHDDMALN 180 QFCNEIGVKR KVLQVWMHNN KNANRHRDGA PRVPADGAPP SPPPSAPPHQ PVGG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-24 | 143 | 203 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0391s0280.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003997.1 | 1e-112 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
TrEMBL | A0A3N7HD75 | 1e-107 | A0A3N7HD75_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s11330.1 | 2e-99 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15092 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 5e-50 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0391s0280.1.p |