PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0369s0430.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YC
Protein Properties Length: 303aa    MW: 32826.1 Da    PI: 4.6988
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0369s0430.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC52.88.5e-177812498
                   NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                            arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl +iv +
  SapurV1A.0369s0430.2.p  7 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLREIVSK 81
                            8**********************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.0E-17666IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.2E-23780IPR009072Histone-fold
SuperFamilySSF471132.1E-191383IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MNFIWQARIK KIMQADEDVG KIALAVPVLV SKALELFLQD LCDRTYEITL QRGAKTMNSL  60
HLKHCVQSYN VFDFLREIVS KVPDYSHGHS DAAADHRPLQ KRKPTVDECN DSDEELKRSR  120
MHETSHAGSS GRGRGRGRGR GRGRGARNIE RETSSRDLDP ESSTTVLQSV KNNSNTGVVM  180
DNGSESKEPV KENNIAGDAA SQAERNFDLN TEVNDSEDAK AAAALAAATT AAAPAAATTA  240
AEPAAASTAA PSLSAEPAAE TNHEEYPGWS LSEMDKMAID PLQLAQLSTR LEEEEEDYDE  300
EG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-187671575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133143RGRGRGRGRGR
2135144RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0369s0430.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034688.11e-154PREDICTED: dr1-associated corepressor homolog
TrEMBLA0A2I4KK441e-152A0A2I4KK44_POPTR; NF-YC family protein
STRINGPOPTR_0001s07050.11e-147(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-63nuclear factor Y, subunit C11