PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0362s0380.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 1205aa MW: 138424 Da PI: 5.5307

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0362s0380.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	203.1	1.7e-62	7	349	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 + L+ecA+a++ g l a++lL+r++ las+++ ++++++++y +eAL +r ++ ++p s ++ +++l + SapurV1A.0362s0380.1.p 7 QKLMECAQAIEGGRLDDADSLLERIQSLASQEDsESTRKVVKYCAEALVRRAYG--------IRPLCPS---RLLTFLFDQLEDTCR 82 79************************9999989***************........2222222...122334445555666 PP GRAS 89 PilkfshltaNqaIleave.geervHiiDfdisqG.lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173 P+++f+ t+ I +a++ g++r+HiiD++i+ W +++ L R +g s+ iT v + + +s+e +++g + SapurV1A.0362s0380.1.p 83 PFFEFARTTTEDIIADALNpGDKRLHIIDLSIMSRiSRWTVFIDDLQGRHGGLQSVLITSVTP-KRSSEEGDRKVG----------D 158 **************9455******875269********************9.223333333333..........6 PP GRAS 174 vpfefnvlvak.rledl.eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257 v++e++ l+ + + + +++Lr k+ +E+++Vn+ + l +ll++++++e+ vL+ vk+l+++++v++eq a++ns+++ +r+ SapurV1A.0362s0380.1.p 159 VDLEWRQLIYNsPADIVkCFSKLRRKRkDEMVVVNWGFILGKLLAQDGAIEQ----VLSKVKDLEADIMVISEQQANLNSPDLSNRL 241 8888888866635555534689999988*******************9....*************************** PP GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 ++l+yys++f+sle++ ++r + + +++r+i nvvaceg +r+er e++ +W++rl++aGF+p+pl+ ll+ SapurV1A.0362s0380.1.p 242 EQSLQYYSTIFESLEQE-----DDRFMSRETYFRRQIGNVVACEGIDRVERIESFDQWQHRLSQAGFSPIPLQAAR--FNYNLLNAL 321 ***********99.....8999999999************************************7543..345677777 PP GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + gyr+e+++ + l W++ pL ++SaW+ SapurV1A.0362s0380.1.p 322 E--GYRIEQKDVHIQLSWHGFPLAVASAWK 349 6..9***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	29.677	1	333	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.9E-60	7	349	IPR005202	Transcription factor GRAS
SMART	SM00614	4.4E-6	613	664	IPR003656	Zinc finger, BED-type
SuperFamily	SSF53098	1.9E-51	751	1175	IPR012337	Ribonuclease H-like domain
Pfam	PF14372	1.5E-19	984	1082	IPR025525	hAT-like transposase, RNase-H fold
Pfam	PF05699	2.4E-13	1128	1181	IPR008906	HAT, C-terminal dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1205 aa Download sequence Send to blast
MACILFQKLM ECAQAIEGGR LDDADSLLER IQSLASQEDS ESTRKVVKYC AEALVRRAYG 60 IRPLCPSRLL TFLFDQLEDT CRPFFEFART TTEDIIADAL NPGDKRLHII DLSIMSRISR 120 WTVFIDDLQG RHGGLQSVLI TSVTPKRSSE EGDRKVGDVD LEWRQLIYNS PADIVKCFSK 180 LRRKRKDEMV VVNWGFILGK LLAQDGAIEQ VLSKVKDLEA DIMVISEQQA NLNSPDLSNR 240 LEQSLQYYST IFESLEQEDD RFMSRETYFR RQIGNVVACE GIDRVERIES FDQWQHRLSQ 300 AGFSPIPLQA ARFNYNLLNA LEGYRIEQKD VHIQLSWHGF PLAVASAWKF TDPPQSSSGL 360 CVMQDRVDDS EETASSSESE DDEENDPCIM ADRNLWSTQG STMNRIAASA KLFDILEYLC 420 HLYKLPVAVT WISDNRGWNK RILCIDYSAC YTVMPSIHDF VGGHAHHRLE EGQGVAGKAL 480 QSNIHFQRVW RNRILRACFA IRLTSTHSCK DDYVVEFYLP EGMEETSERE LLVSEVLRTL 540 QENCLESWKV WVGELNEASG FRVGLDDERM SNIPHEALEQ DIQEQSAIAP PSLNFENALL 600 IVDGGLHSTN KRRKISSVWD KFDKNWGENG EVWATFKHCK NMYGAESKRG TSSLHKHLRK 660 CLPSRQDKAE QQPLIFETSD SSTSIIQRNS VKNQERSHLD IETMIINHGY PLDMVQHECF 720 EIFVKNLQPM FELHSKDVVE ANVLAICRQE KEKLIKYFES LSCLLSLILE LWSSNDRMMT 780 YCCLTVHFID DGWQLKKKIL AFRNLQYNYD MGTIHEFIKS VLAEWRINKN VRFILLDITP 840 PKEHMIGELR SKVSDITIHG HLFCVSSYAQ ILNLLVQDGL SEIRSLLYKI RECIEYVNGS 900 SLGRKMLQMA IRNGSLQDKE MPFQDVPARW DTTFLMLERS LEFREAFNHL EHLDCDFKVN 960 PSAEEWNKAS SICECLKEFH KSTSNFPTTL EGYFLSVRDV YKNLLKWEQS EHVYVRSIAN 1020 TMKGKFDEYW GEASLALGIS VVLNPSFKLE LVEYGYQQVY GIDASLHLSK FLGNVTGVYH 1080 KYAKDFGDQG PSSSAMVDKS LRPSSDISFE EWRKGRYERN MVQSQQNELD QYLEQPPEKL 1140 DKDGDVLAWW QQNAQKFPIL GKMARDFLAI PVSTAISKSS EVMKMTSVHE GLVFNMWEGL 1200 VGQP*

Sequence ? help Back to Top

Protein Sequence Length: 1205 aa Download sequence Send to blast

MACILFQKLM ECAQAIEGGR LDDADSLLER IQSLASQEDS ESTRKVVKYC AEALVRRAYG  60
IRPLCPSRLL TFLFDQLEDT CRPFFEFART TTEDIIADAL NPGDKRLHII DLSIMSRISR  120
WTVFIDDLQG RHGGLQSVLI TSVTPKRSSE EGDRKVGDVD LEWRQLIYNS PADIVKCFSK  180
LRRKRKDEMV VVNWGFILGK LLAQDGAIEQ VLSKVKDLEA DIMVISEQQA NLNSPDLSNR  240
LEQSLQYYST IFESLEQEDD RFMSRETYFR RQIGNVVACE GIDRVERIES FDQWQHRLSQ  300
AGFSPIPLQA ARFNYNLLNA LEGYRIEQKD VHIQLSWHGF PLAVASAWKF TDPPQSSSGL  360
CVMQDRVDDS EETASSSESE DDEENDPCIM ADRNLWSTQG STMNRIAASA KLFDILEYLC  420
HLYKLPVAVT WISDNRGWNK RILCIDYSAC YTVMPSIHDF VGGHAHHRLE EGQGVAGKAL  480
QSNIHFQRVW RNRILRACFA IRLTSTHSCK DDYVVEFYLP EGMEETSERE LLVSEVLRTL  540
QENCLESWKV WVGELNEASG FRVGLDDERM SNIPHEALEQ DIQEQSAIAP PSLNFENALL  600
IVDGGLHSTN KRRKISSVWD KFDKNWGENG EVWATFKHCK NMYGAESKRG TSSLHKHLRK  660
CLPSRQDKAE QQPLIFETSD SSTSIIQRNS VKNQERSHLD IETMIINHGY PLDMVQHECF  720
EIFVKNLQPM FELHSKDVVE ANVLAICRQE KEKLIKYFES LSCLLSLILE LWSSNDRMMT  780
YCCLTVHFID DGWQLKKKIL AFRNLQYNYD MGTIHEFIKS VLAEWRINKN VRFILLDITP  840
PKEHMIGELR SKVSDITIHG HLFCVSSYAQ ILNLLVQDGL SEIRSLLYKI RECIEYVNGS  900
SLGRKMLQMA IRNGSLQDKE MPFQDVPARW DTTFLMLERS LEFREAFNHL EHLDCDFKVN  960
PSAEEWNKAS SICECLKEFH KSTSNFPTTL EGYFLSVRDV YKNLLKWEQS EHVYVRSIAN  1020
TMKGKFDEYW GEASLALGIS VVLNPSFKLE LVEYGYQQVY GIDASLHLSK FLGNVTGVYH  1080
KYAKDFGDQG PSSSAMVDKS LRPSSDISFE EWRKGRYERN MVQSQQNELD QYLEQPPEKL  1140
DKDGDVLAWW QQNAQKFPIL GKMARDFLAI PVSTAISKSS EVMKMTSVHE GLVFNMWEGL  1200
VGQP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-20	11	348	24	377	Protein SCARECROW
5b3h_D	7e-20	11	348	24	377	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	186	RRKRKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0362s0380.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443927.1	0.0	uncharacterized protein LOC112324561
STRING	POPTR_0016s02730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15568	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	2e-57	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0362s0380.1.p