PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0362s0340.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 323aa MW: 36795 Da PI: 5.2792

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0362s0340.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	182.5	3e-56	7	312	3	328
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsev 87 + L+ecAea++ g+l a++lLa ++ las+++ ++++++a+y +eAL +r ++ + l p ++ + s e a ++ f e SapurV1A.0362s0340.1.p 7 QRLMECAEAIEGGNLDIADSLLASIQSLASQEDsESTRKVAKYCAEALVRRAYG-----IRPLcPLRSPT---SLFEPAKDSCFLE- 84 679***********************9999989***************.....33331333333...5555555555555. PP GRAS 88 sPilkfsh.ltaNqaIleavege.ervHiiDfdisqGl.QWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAe 170 f t+ q I ea++ +r+HiiD++i G+ W ++ L R +g s+ iT v ++ s+ s+++ +e ge +++ SapurV1A.0362s0340.1.p 85 -----FIKiTTTQQVIAEAFNPRnKRLHIIDLSIISGIsRWTFMIPDLIGRYGGLQSVLITSVTPKLSNhSQQSSQEWGEMIQH--- 163 .....4440567789998769********748********************97666699999999998876... PP GRAS 171 elgvpfefnvlvakrledl..eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 v+++++ l+ ++ +d+ +++L k+ +E+++Vn+ + + +ll++++++e+ vL+ vk+l+++++v++eqea++ns+++ SapurV1A.0362s0340.1.p 164 ---VNLKWRQLIYNSPDDIvkCFSKLGRKRkDEMVVVNWDFTIRNLLAQDGAIEQ----VLSKVKDLEADIMVISEQEANLNSPDLS 243 ...5555555555544444334699988888*******************9....************************ PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328 +r+ ++l+yys +f+sle+ +++ + + +++r+i nvvaceg +r+er+e++ +W++rl++aGF p+p SapurV1A.0362s0340.1.p 244 KRLEQSLQYYSIVFESLEQD-----NDKFMSRETYFRRQIGNVVACEGIDRVERMESFDQWQHRLSQAGFCPLP 312 *************999.....6777777888*********************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	32.647	1	323	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-53	7	312	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MASLQFQRLM ECAEAIEGGN LDIADSLLAS IQSLASQEDS ESTRKVAKYC AEALVRRAYG 60 IRPLCPLRSP TSLFEPAKDS CFLEFIKITT TQQVIAEAFN PRNKRLHIID LSIISGISRW 120 TFMIPDLIGR YGGLQSVLIT SVTPKLSNHS QQSSQEWGEM IQHVNLKWRQ LIYNSPDDIV 180 KCFSKLGRKR KDEMVVVNWD FTIRNLLAQD GAIEQVLSKV KDLEADIMVI SEQEANLNSP 240 DLSKRLEQSL QYYSIVFESL EQDNDKFMSR ETYFRRQIGN VVACEGIDRV ERMESFDQWQ 300 HRLSQAGFCP LPPEALYSLG NSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-17	6	312	5	327	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0362s0340.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443928.1	1e-124	uncharacterized protein LOC18108977 isoform X1
TrEMBL	A0A3N7HPP8	1e-130	A0A3N7HPP8_POPTR; Uncharacterized protein
STRING	POPTR_0016s02700.1	1e-129	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF28122	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	9e-47	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0362s0340.1.p