PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0360s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 412aa    MW: 45789.8 Da    PI: 8.5227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0360s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.5e-07238260123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             + C+ Cgk F+r  nL+ H+r H
  SapurV1A.0360s0140.1.p 238 HYCQVCGKGFKRDANLRMHMRAH 260
                             68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.07E-6236264No hitNo description
PROSITE profilePS5015712.653238265IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-6238264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034238260IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
SMARTSM0035589295328IPR015880Zinc finger, C2H2-like
SMARTSM0035522333355IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MILGDSSCFP GAFSQGSQLY QAVTEDVVSS TLEASSSSEI HSNSLLYYLS ILKEKVHQVE  60
SLVIVLIAPD HSLQPDDNKS APVALASMST MIQEVIVAAS SIMYTCQQMG IGNDISGNNI  120
STSELHKPHR RKAEEISLLS QPDFGGSHAA GNIGQERGQS FFTPESFDRY SNSYNNNCYT  180
NDSIRGIQVS SNNRVDIRRE ILFQGGENIG EGNLQGQSPK NYDIVELDAA DLLAKYTHYC  240
QVCGKGFKRD ANLRMHMRAH GDEYKTTAAL SNPMKNNPGA TSENKETSTR IPRKYSCPHE  300
GCRWNKKHAK FQPLKSMICV KNHYKRSHCP KMYVCKRCNK KQFSVLSDLR THEKHCGDLK  360
WLCSCGTTFS RKDKLMGHVA LFVGHSPAIG GLTKPAKVEN QAMQMHLYHD R*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0360s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384968.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLU5GGZ90.0U5GGZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-105C2H2 family protein