PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0336s0050.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 407aa    MW: 44541.3 Da    PI: 6.2935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0336s0050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.2e-10249297355
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  SapurV1A.0336s0050.2.p 249 NSHSLAERVRREKISERMRMLQELVPGC----NKITGKAVMLDEIINYVQSLQ 297
                             58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.37E-11244301No hitNo description
SuperFamilySSF474594.71E-17244313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.567246296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17247313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-7249297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDGSGDNNGD LGYQNRAESV MNCPSSGMNT NPFYASAWDP VVSLSRPGNF VGSSTGSQSE  60
FSNSPFPIVM ENPGISNTCH LVRYPSDSGF IELVPKFPGF GSGNFSEMVG SLGLTDCSQI  120
VNAGCPPNYK EANNESTSHG AQRQEDHQLS EETTIGALPN GKRRRRVAES NSPFDPNKNA  180
EGEFQKYPSG ESSDSAKELD EKKQKIEQNR GANSCGKQVV KQTKDNPQSR EAPKENYIHV  240
RARRGQATNS HSLAERVRRE KISERMRMLQ ELVPGCNKIT GKAVMLDEII NYVQSLQQQV  300
EFLSMKLATV NPELYNDVER IQSKDILHSR VGNEAIRGLS PGTNSLQYSH GTFQPGIPVI  360
PNPNPHFSPA HHAILDNELQ SFFQMGFDSS SAIDSLGPNG HLKPEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166KRRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0336s0050.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458141.10.0transcription factor bHLH74 isoform X2
TrEMBLA0A2K2AGW60.0A0A2K2AGW6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19020.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-90bHLH family protein