PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0331s0130.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARF | ||||||||
Protein Properties | Length: 593aa MW: 65482 Da PI: 5.412 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.1 | 4.6e-25 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f k+ltpsd+++ g +++p+ +a+++ +++ + tlt++d +g sW++++iyr++++r++lt+GW++Fv+ ++L +gD+v SapurV1A.0331s0130.2.p 126 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLTVTDIHGISWDFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDSV 210 89*********************999****985444444..9********************************************* PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 vF+ ++ ++e++++v+r+ SapurV1A.0331s0130.2.p 211 VFM--RNLKGEMFIGVRRA 227 ***..568999*****996 PP | |||||||
2 | Auxin_resp | 87.2 | 3.1e-29 | 271 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrast.seFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+++ +F+vvY+Pra++ s+Fvv++e ve+al v ++ GmR+kma+etedss+ ++ +Gtv+g+ d+ W++S+Wr+L+ SapurV1A.0331s0130.2.p 271 AVEMAAKGLPFDVVYYPRAGWySDFVVRAEAVEAALGVFWTSGMRVKMAMETEDSSRMTWfQGTVSGTGLPDSGAWRGSPWRMLQ 355 6788999************9779************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.6E-34 | 117 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-30 | 120 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.56E-20 | 125 | 226 | No hit | No description |
Pfam | PF02362 | 1.4E-22 | 126 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.5E-22 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.661 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-27 | 271 | 355 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MPQPTELSRV DQRIWRACAG SSVQIPTVNS RVYYFPQGHL EQSSSSTAPH PPSLSNLALS 60 KPLISCQISA VDLLADPVTD EVFIRLLLLP LNNNSCNLPL SFLEPSRREG GGVNEVDDDE 120 NKILSFAKIL TPSDANNGGG FSVPRFCADS IFPPLNYQAE PPVQTLTVTD IHGISWDFRH 180 IYRGTPRRHL LTTGWSKFVN NKKLIAGDSV VFMRNLKGEM FIGVRRAVRL NNSARWREQV 240 VGGCGETKVK VEEGFSRSGR GRLSQEAVAE AVEMAAKGLP FDVVYYPRAG WYSDFVVRAE 300 AVEAALGVFW TSGMRVKMAM ETEDSSRMTW FQGTVSGTGL PDSGAWRGSP WRMLQVTWDE 360 PEVLQNAKRV SPWQVEFVAT TSPLQAAFPP MKKLRYPNDS RFLTDGELFF PMSDLTNSTM 420 GHMNASMLNY STFPAGMQGA RQDSFSTFGL SNFISDTAPQ VFSDRAFGNN LVLKMKRMPS 480 EMNIGSLQSE NLSPESQSSA YSFDTGFVEN KGFNPKKVGI NSIQLFGKII HMDQPVENGF 540 EDVGFMDDSS KCCNETEGVD ALELSLSSSY TELLGRIDVQ CQRTSPVEAC ST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 7e-69 | 10 | 376 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0331s0130.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006322.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Swissprot | Q84WU6 | 0.0 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | B9H788 | 0.0 | B9H788_POPTR; Auxin response factor | ||||
STRING | POPTR_0005s16320.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 0.0 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0331s0130.2.p |