PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0323s0180.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 256aa MW: 29519.4 Da PI: 6.8024 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.7 | 8.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gk+ eys+ SapurV1A.0323s0180.1.p 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTRGKISEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 90.9 | 2.2e-30 | 75 | 174 | 1 | 100 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 yq+++ + + ++++es++ ++ kL +++e Lqr++R++ G++L+sL+lkeLq Leqq++++lk+iRs+K++ll+e+++el+kkekel SapurV1A.0323s0180.1.p 75 YQEQQLVPNGSEHQESWSLDHPKLMARVEILQRNLRNYTGQELDSLNLKELQYLEQQIDTALKRIRSRKSQLLHESLNELRKKEKEL 161 7889999999***************************************************************************** PP K-box 88 qeenkaLrkklee 100 qe+n L+++++e SapurV1A.0323s0180.1.p 162 QEQNSILEEQVKE 174 *********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.525 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-32 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.70E-39 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-24 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.133 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST RGKISEYSTD 60 SSMESILERY ERCSYQEQQL VPNGSEHQES WSLDHPKLMA RVEILQRNLR NYTGQELDSL 120 NLKELQYLEQ QIDTALKRIR SRKSQLLHES LNELRKKEKE LQEQNSILEE QVKENEKSLT 180 EQAQWEQLNL GQNSSSFMPP VVQPPLQPPM PSHPPLTIGD SFRSIGFLNG DENAEVQTQP 240 STMPPWMLRH VNDTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-18 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 1e-18 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 1e-18 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 1e-18 | 1 | 70 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0323s0180.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208377 | 2e-84 | AC208377.1 Populus trichocarpa clone JGIACSB249-L10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306050.3 | 1e-159 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | D7SMN6 | 5e-97 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A2K2AT73 | 1e-158 | A0A2K2AT73_POPTR; Uncharacterized protein | ||||
STRING | EOY03792 | 1e-108 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-74 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0323s0180.1.p |
Publications ? help Back to Top | |||
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