PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0321s0370.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 341aa    MW: 38456.6 Da    PI: 6.3248
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0321s0370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM140.87.9e-44201473127
                     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             +G+rFhPt  elv +yLk+k+ g+++e  ++++ev+++++ePw+Lp k k+k++++ewyfF++rd ky +g+r+nr tk g+Wk tg
  SapurV1A.0321s0370.1.p  20 VGYRFHPTHAELVYNYLKPKILGDDVEDLSIMPEVHVCQHEPWELPdKsKIKSKDSEWYFFCPRDFKYLNGSRSNRRTKLGFWKPTG 106
                             7************************99999***************96358889999******************************* PP

                     NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                             k+ ++ sk +++++g++ktLvfy++ +pk+ +t W+mhey+
  SapurV1A.0321s0370.1.p 107 KSLKIRSKgTKKVIGIRKTLVFYTKASPKSIRTGWIMHEYE 147
                             *******977778***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-4816168IPR003441NAC domain
PROSITE profilePS5100547.39618168IPR003441NAC domain
PfamPF023651.2E-2420147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSYSFPSVMN DSTKPPIPEV GYRFHPTHAE LVYNYLKPKI LGDDVEDLSI MPEVHVCQHE  60
PWELPDKSKI KSKDSEWYFF CPRDFKYLNG SRSNRRTKLG FWKPTGKSLK IRSKGTKKVI  120
GIRKTLVFYT KASPKSIRTG WIMHEYEYIS DLGLSNQGEY VLCKLKKKPD EKTNKGEPNH  180
QMVSISDPEA APNCIIEGER GSSMEMPSKF INHSTRGYGE RSGILDLDFE DPNPDKEACI  240
PAPDEGERNS PTAMPWCLEN GNPRETTEEG CLRSSVVSPE NSPTDAWLHE LVELIPRIWE  300
KLKASILDVE NNLPAPFQPA ASESPEKISL RNGVDAPVST *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-322116823168NAC domain-containing protein 19
3swm_B2e-322116823168NAC domain-containing protein 19
3swm_C2e-322116823168NAC domain-containing protein 19
3swm_D2e-322116823168NAC domain-containing protein 19
3swp_A2e-322116823168NAC domain-containing protein 19
3swp_B2e-322116823168NAC domain-containing protein 19
3swp_C2e-322116823168NAC domain-containing protein 19
3swp_D2e-322116823168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0321s0370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320909.21e-178NAC domain-containing protein 71 isoform X1
TrEMBLA0A2K1XTR71e-176A0A2K1XTR7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10370.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1616767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.26e-48TCV-interacting protein