PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0311s0050.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 328aa    MW: 36704.6 Da    PI: 4.7065
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0311s0050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-1959112356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  SapurV1A.0311s0050.2.p  59 KKRRLSGDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 112
                             566899***********************************************9 PP
2HD-ZIP_I/II130.28.1e-4258150193
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk++ +++++++e+L
  SapurV1A.0311s0050.2.p  58 EKKRRLSGDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKAKYDSLKHNFDAIQHDNEAL 144
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reelke 93 
                              +e++e
  SapurV1A.0311s0050.2.p 145 LKEIRE 150
                             999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-1946116IPR009057Homeodomain-like
PROSITE profilePS5007117.49154114IPR001356Homeobox domain
SMARTSM003897.4E-1857118IPR001356Homeobox domain
CDDcd000861.15E-1659115No hitNo description
PfamPF000462.2E-1659112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-2061121IPR009057Homeodomain-like
PRINTSPR000319.4E-68594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000319.4E-694110IPR000047Helix-turn-helix motif
PfamPF021832.5E-18114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MKRSLGSSDS LGALMSICPN TEHSPRNNAH VYSREFQSML NDLDEEGCVE ESGGHVTEKK  60
RRLSGDQVKA LEKNFEVENK LEPERKVKLA QELGLQPRQV AVWFQNRRAR WKTKQLERDY  120
GVLKAKYDSL KHNFDAIQHD NEALLKEIRE LKAKLNEENT ESNVSVKEEI ILAESEGKAT  180
EEDAPPLLDS ITASENKGLN YENFNSSSSI NIGLGASLFP DFKDGSSDSD SSAILNEDNS  240
PNPAISSSGI LQSQLMMSPP PSSSLKFNCS ASSPSPSTMN CFQFSKTFQT QFVKLEEHNF  300
FSSEEACNFF SDEQPPTLHW YCSDQWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0311s0050.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479450.0EF147945.1 Populus trichocarpa clone WS0126_C14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031071.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2
SwissprotP466685e-81ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBLA0A2K2ACU40.0A0A2K2ACU4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s07290.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-83homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]