PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0309s0130.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 329aa    MW: 37041.2 Da    PI: 6.2994
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0309s0130.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.71.2e-33199253155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l++m+v++Lt++hvkSHLQkYR+
  SapurV1A.0309s0130.4.p 199 KPRMRWTPELHEAFVEAVSQLGGSERATPKGVLKHMNVESLTIYHVKSHLQKYRT 253
                             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.428196256IPR017930Myb domain
SuperFamilySSF466891.51E-18197253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-31198255IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-24199253IPR006447Myb domain, plants
PfamPF002492.1E-10201252IPR001005SANT/Myb domain
PfamPF143794.2E-11284306IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMRNPASHQA SPLSPGNRSV GPMFSSSSRF SNDMHVSSVS AQGRQSHNSP FTSQSLRNRE  60
DFTPTHDSHS EVQSTEFIAY SDENKDLSWS VDSLLDFAEN VPVQNSQVES SAGVFASEDH  120
ANRTNWQEWA DQLISVDDDL EPHWSDILND VNKTDSRQKE LKPSPNISVQ QPPIHQHQTA  180
HSGEVCAVAN PLSPAPPTKP RMRWTPELHE AFVEAVSQLG GSERATPKGV LKHMNVESLT  240
IYHVKSHLQK YRTARYKPES SCGTSERKMS PIEEIKSLDL KASMGITEAL RMQMEVQKRL  300
HEQLEVCYWC LSFSVCGLEF RWHFLLPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-30199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-30199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-30199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-30199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-30199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-30199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-30199257260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-30199257260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0309s0130.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038494.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
SwissprotF4J3P72e-75PHLD_ARATH; Myb family transcription factor PHL13
TrEMBLB9I5P90.0B9I5P9_POPTR; Uncharacterized protein
STRINGPOPTR_0013s04530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.24e-78G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]