PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0309s0130.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 432aa MW: 48409.4 Da PI: 5.6075 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.2 | 1.9e-33 | 199 | 253 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l++m+v++Lt++hvkSHLQkYR+ SapurV1A.0309s0130.2.p 199 KPRMRWTPELHEAFVEAVSQLGGSERATPKGVLKHMNVESLTIYHVKSHLQKYRT 253 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.428 | 196 | 256 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-18 | 197 | 253 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.5E-31 | 198 | 255 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-24 | 199 | 253 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-10 | 201 | 252 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-24 | 284 | 330 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MMRNPASHQA SPLSPGNRSV GPMFSSSSRF SNDMHVSSVS AQGRQSHNSP FTSQSLRNRE 60 DFTPTHDSHS EVQSTEFIAY SDENKDLSWS VDSLLDFAEN VPVQNSQVES SAGVFASEDH 120 ANRTNWQEWA DQLISVDDDL EPHWSDILND VNKTDSRQKE LKPSPNISVQ QPPIHQHQTA 180 HSGEVCAVAN PLSPAPPTKP RMRWTPELHE AFVEAVSQLG GSERATPKGV LKHMNVESLT 240 IYHVKSHLQK YRTARYKPES SCGTSERKMS PIEEIKSLDL KASMGITEAL RMQMEVQKRL 300 HEQLEIQRNL QLRIEEQGRY LQEMFEKQRK REDDKSKAPS SSLDDPSLLQ AKLEQSSTNN 360 KLVASELDIV KTSNEIALPE ESSPSISRKQ KAPEERNDQV LDQIEEESSP APTKRPRRDE 420 SAELSTGAAS N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-28 | 199 | 257 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-28 | 199 | 257 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-28 | 199 | 257 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-28 | 199 | 257 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-28 | 199 | 257 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-28 | 199 | 257 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-28 | 199 | 257 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-28 | 199 | 257 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0309s0130.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011038494.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X1 | ||||
Swissprot | F4J3P7 | 1e-92 | PHLD_ARATH; Myb family transcription factor PHL13 | ||||
TrEMBL | B9I5P9 | 0.0 | B9I5P9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s04530.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04450.2 | 1e-93 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0309s0130.2.p |
Publications ? help Back to Top | |||
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