PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0301s0070.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 421aa MW: 47092.9 Da PI: 6.1516 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.9 | 6.7e-17 | 64 | 151 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +k ++ps+v+ +l l +kf+++h ++ e++t+ le e g+s+ k+ rk++ l++GW+ F+ +++Lk gD+vvF+l++ + SapurV1A.0301s0070.2.p 64 IKHMVPSNVTGGFCLNLGRKFCDAHLQE--EDTTIFLEGEGGKSYPTKYLARKSG----LSGGWRCFAIDHNLKGGDIVVFHLVNPT 144 6899********************9533..678****************666666....9**********************98766 PP EE..EEEEE CS B3 89 efelvvkvf 97 +f +v + SapurV1A.0301s0070.2.p 145 TF--KVYIA 151 66..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 57 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-22 | 58 | 154 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.01E-22 | 61 | 152 | No hit | No description |
SMART | SM01019 | 1.1E-16 | 63 | 154 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.632 | 63 | 154 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-14 | 64 | 152 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MAMVVEANVH QLVPYDVSMK SESHKRRRDS SADQYANCEE DKADAMIRAK DIQANLAPEF 60 PSIIKHMVPS NVTGGFCLNL GRKFCDAHLQ EEDTTIFLEG EGGKSYPTKY LARKSGLSGG 120 WRCFAIDHNL KGGDIVVFHL VNPTTFKVYI ARVNCSQNEN GALGLLKLEA CVKPMNCKSL 180 SKGGEEMKNQ VLKPLLLDNP EENSEKNMVI HVTDLGTRSV HSENESEDLG FEITDGIRLS 240 ESVVDFKEVK SFNDFDILVN GLVINCELSK RLQIKYYELC CSQKSFLHEH LLDGLNCKLV 300 AGMLAETINI ADAIRASKLT TSQNDFATWE NTLKSFQGLG MNVGFLLARL GRLVTLSDKS 360 KRVKVATLER VNAEMERRSL EAKLLEVKET MNRLDFEIET LEMNSENLGR VFEKMATAHW 420 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0301s0070.2.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464278.1 | 1e-170 | B3 domain-containing protein Os01g0234100 | ||||
TrEMBL | B9HRZ5 | 1e-173 | B9HRZ5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s10610.1 | 1e-173 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-32 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0301s0070.2.p |