PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0288s0210.7.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 141aa MW: 15738.6 Da PI: 9.9077

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0288s0210.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	140.1	2.4e-43	22	107	83	170
YABBY 83 ksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 + ++ + s+s+s++++ +++++e pr+pp irPPekrqrvPsaynrfikeeiqrika+nPdi hreafs+aaknWahfP+ihfg SapurV1A.0288s0210.7.p 22 EDLNIDSGSSSKSNKVTA-FKSTEHEPPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKATNPDINHREAFSTAAKNWAHFPHIHFG 106 333344444444444433.5677888999999.9****************************************************9 PP YABBY 170 l 170 l SapurV1A.0288s0210.7.p 107 L 107 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.4E-40	19	107	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-8	49	100	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.2E-5	55	101	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MGASFQALPL QDPQKLNLIN SEDLNIDSGS SSKSNKVTAF KSTEHEPPRM PPIRPPEKRQ 60 RVPSAYNRFI KEEIQRIKAT NPDINHREAF STAAKNWAHF PHIHFGLKLD SNKHPKLDHQ 120 SFAGEGTQNT SGLYDINGVL *

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0288s0210.7.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453770.1	8e-88	axial regulator YABBY 5 isoform X4
Swissprot	Q9XFB0	4e-46	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2K2C1G2	2e-86	A0A2K2C1G2_POPTR; Uncharacterized protein
STRING	POPTR_0001s22180.1	6e-87	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-36	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0288s0210.7.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]